Matthew E. Jurek Week 12: Difference between revisions
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#*I chose Profile 9 because it is down-regulated. My partner, Anthony, is focusing on a profile that is up-regulated. We thought it'd be interesting if we each explored a profile that behaved differently. | #*I chose Profile 9 because it is down-regulated. My partner, Anthony, is focusing on a profile that is up-regulated. We thought it'd be interesting if we each explored a profile that behaved differently. | ||
#How many genes belong to this profile? | #How many genes belong to this profile? | ||
#*There are 95 genes belonging to this profile. | |||
#How many genes were expected to belong to this profile? | #How many genes were expected to belong to this profile? | ||
#*23.9 genes were expected to belong to this profile. | |||
#What is the p value for the enrichment of genes in this profile? | #What is the p value for the enrichment of genes in this profile? | ||
#How many GO terms are associated with this profile at p < 0.05? | #How many GO terms are associated with this profile at p < 0.05? | ||
#How many GO terms are associated with this profile with a corrected p value < 0.05? | #How many GO terms are associated with this profile with a corrected p value < 0.05? | ||
#Look up the definitions for each of the terms at http://geneontology.org. Write a paragraph that describes the biological interpretation of these GO terms. In other words, why does the cell react to cold shock by changing the expression of genes associated with these GO terms? | #Look up the definitions for each of the terms at http://geneontology.org. Write a paragraph that describes the biological interpretation of these GO terms. In other words, why does the cell react to cold shock by changing the expression of genes associated with these GO terms? | ||
Revision as of 14:46, 10 April 2013
Matthew E. Jurek BIOL398-03/S13
Assignment Page
- BIOL398-03/S13:Week_2
- BIOL398-03/S13:Week 3
- BIOL398-03/S13:Week 4
- BIOL398-03/S13:Week_5
- BIOL398-03/S13:Week_6
- BIOL398-03/S13:Week_8
- BIOL398-03/S13:Week_9
- BIOL398-03/S13:Week_11
- BIOL398-03/S13:Week_12
- BIOL398-03/S13:Week_13
- BIOL398-03/S13:Week_14
User Page
- Matthew E. Jurek Week 2
- Matthew E. Jurek Week 3
- Matthew E. Jurek Week 4
- Matthew E. Jurek Week 5
- Matthew E. Jurek Week 6
- Anthony J. Wavrin/Matthew E. Jurek Metabolic Pathways Project
- Matthew E. Jurek Week 8
- Matthew E. Jurek Week 9
- Matthew E. Jurek Week 11
- Matthew E. Jurek Week 12
- Matthew E. Jurek Week 13
- Matthew E. Jurek Week 14
- Final Presentation
Analyzing and Interpreting STEM Results
- Why did you select this profile? In other words, why was it interesting to you?
- I chose Profile 9 because it is down-regulated. My partner, Anthony, is focusing on a profile that is up-regulated. We thought it'd be interesting if we each explored a profile that behaved differently.
- How many genes belong to this profile?
- There are 95 genes belonging to this profile.
- How many genes were expected to belong to this profile?
- 23.9 genes were expected to belong to this profile.
- What is the p value for the enrichment of genes in this profile?
- How many GO terms are associated with this profile at p < 0.05?
- How many GO terms are associated with this profile with a corrected p value < 0.05?
- Look up the definitions for each of the terms at http://geneontology.org. Write a paragraph that describes the biological interpretation of these GO terms. In other words, why does the cell react to cold shock by changing the expression of genes associated with these GO terms?
