MIT CSBi PhDs: Difference between revisions

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|Christoph Engert||christoph@mit.edu||2008||[http://web.mit.edu/horvitz/www/ Robert Horvitz], [http://web.mit.edu/biophysics Alexander van Oudenaarden]||Heidelberg University (GER)||Mol. Biotech.||Physics of Worm Development (Working Title)||[http://mit.academia.edu/ChristophEngert more...]||-||-|
|Christoph Engert||christoph@mit.edu||2008||[http://web.mit.edu/horvitz/www/ Robert Horvitz], [http://web.mit.edu/biophysics Alexander van Oudenaarden]||Heidelberg University (GER)||Mol. Biotech.||Physics of Worm Development (Working Title)||[http://mit.academia.edu/ChristophEngert more...]||-||-|
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|Ana Paula Leite||apleite@mit.edu||2008||[http://www.broadinstitute.org/about/core-members/aviv-regev Aviv Regev]||University of Minho, Portugal||Mathematics||Integrative approaches for systematic reconstruction of regulatory circuits in mammals||||Sept, 2012||Postdoc at Instituto de Medicina Molecular, Lisbon||
|Ana Paula Leite||apleite@mit.edu||2008||[http://www.broadinstitute.org/about/core-members/aviv-regev Aviv Regev]||University of Minho, Portugal||Mathematics||Integrative approaches for systematic reconstruction of regulatory circuits in mammals||||Sept, 2012||Research Associate at University College London (UCL)||
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|Alex Robertson||alexrson@mit.edu||2008||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-|
|Alex Robertson||alexrson@mit.edu||2008||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-|
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|Daniel Park||dkpark@mit.edu||2008||[http://people.csail.mit.edu/bab/index.html Bonnie Berger]||UC Irvine||Computer Science, Biology||Comparative analysis of protein-protein interaction networks ||||-||-|
|Daniel Park||dkpark@mit.edu||2008||[http://people.csail.mit.edu/bab/index.html Bonnie Berger]||UC Irvine||Computer Science, Biology||Comparative analysis of protein-protein interaction networks ||||-||-|
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|Jonathan Rameseder||johnny@mit.edu||2008||[http://ki.mit.edu/people/faculty/yaffe Mike Yaffe]||Upper Austria University of Applied Sciences||Bioinformatics||An Informatics Platform for RNAi Analysis Using High-Throughput Microscopy and Functional Readouts to Build and Explore Signal Transduction Networks||[http://openwetware.org/wiki/User:Jonathan_Rameseder CV and contact info]||-||-|
|Jonathan Rameseder||johnny@mit.edu||2008||[http://ki.mit.edu/people/faculty/yaffe Mike Yaffe]||Upper Austria University of Applied Sciences||Bioinformatics||Multivariate methods for the statistical analysis of hyperdimensional high-content screening data||[http://openwetware.org/wiki/User:Jonathan_Rameseder CV and contact info]||July, 2014||Data Scientist at Apple Inc., Cupertino, California||
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|Chris Smillie||csmillie@mit.edu||2009||[http://almlab.mit.edu Eric Alm]||University of Arizona||Biology and Math||Evolution and ecology of the human microbiome||||-||-|
|Chris Smillie||csmillie@mit.edu||2009||[http://almlab.mit.edu Eric Alm]||University of Arizona||Biology and Math||Evolution and ecology of the human microbiome||||-||-|
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|Xuebing Wu||wuxbl@mit.edu||2009||[http://web.mit.edu/sharplab/ Phil Sharp]||Tsinghua University (China)||Computer Science & Bioinformatics||High throughput mapping of RNA-RNA interactions||[http://www.mit.edu/~wuxbl/ homepage]||-||-|
|Xuebing Wu||wuxbl@mit.edu||2009||[http://web.mit.edu/sharplab/ Phil Sharp]||Tsinghua University (China)||Computer Science & Bioinformatics||High throughput mapping of RNA-RNA interactions||[http://www.mit.edu/~wuxbl/ homepage]||-||-|
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|Anna Podgornaia||anna2009@mit.edu||2009||[http://laublab.mit.edu Michael Laub]||UC Berkeley||Biochemistry||Sequence space of the two-component signaling interface||||-||-|
|Anna Podgornaia||anna2009@mit.edu||2009||[http://laublab.mit.edu Michael Laub]||UC Berkeley||Biochemistry||Sequence space of the two-component signaling interface||||September 2014||-|
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|Zi Peng Fan||zifan@mit.edu||2009||[http://web.wi.mit.edu/young  Richard Young]||Brandeis University||Biochemistry||Study of transcriptionally coherent clusters in the human embryonic stem cells||||-||-|
|Zi Peng Fan||zifan@mit.edu||2009||[http://web.wi.mit.edu/young  Richard Young]||Brandeis University||Biochemistry||Study of transcriptionally coherent clusters in the human embryonic stem cells||||-||-|
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|Nathan Cermak||cermak@mit.edu||2010||[http://manalis-lab.mit.edu Scott Manalis], [http://web.mit.edu/polz/ Martin Polz] ||University of Washington||Biochemistry, Applied Math, Sociology||Marine microbe biomass accumulation||[http://cermak.scripts.mit.edu home]||-||-|
|Nathan Cermak||cermak@mit.edu||2010||[http://manalis-lab.mit.edu Scott Manalis], [http://web.mit.edu/polz/ Martin Polz] ||University of Washington||Biochemistry, Applied Math, Sociology||Marine microbe biomass accumulation||[http://cermak.scripts.mit.edu home]||-||-|
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|Thomas Gurry||tg296@mit.edu||2010||[http://www.rle.mit.edu/cbg/ Collin Stultz]||Imperial College London||Biochemistry||Formation of ordered multimers in intrinsically disordered proteins||||-||-|
|Thomas Gurry||tg296@mit.edu||2010||[http://www.rle.mit.edu/cbg/ Collin Stultz]||Imperial College London||Biochemistry||Formation of ordered multimers in intrinsically disordered proteins||||December 2014||Postdoc at MIT||
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|Leyla Isik||lisik@mit.edu||2010||[http://cbcl.mit.edu Tomaso Poggio]||Johns Hopkins University||Biomedical Engineering||Timing of object recognition in the human visual system||||-||-|
|Leyla Isik||lisik@mit.edu||2010||[http://cbcl.mit.edu Tomaso Poggio]||Johns Hopkins University||Biomedical Engineering||Timing of object recognition in the human visual system||||-||-|
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|Derrick Sund||dtsund@mit.edu||2011||TBD||University of Arizona||Mathematics, Biochemistry and Molecular Biophysics||TBD||||||-|
|Derrick Sund||dtsund@mit.edu||2011||TBD||University of Arizona||Mathematics, Biochemistry and Molecular Biophysics||TBD||||||-|
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|Amanda Daigle||mandyjoy@mit.edu||2012||[http://fraenkel.mit.edu Ernest Fraenkel]||Wellesley College||Bioinformatics||TBD||||||-|
|Amanda Kedaigle||mandyjoy@mit.edu||2012||[http://fraenkel.mit.edu Ernest Fraenkel]||Wellesley College||Bioinformatics||Chromatin structure of Huntington's Disease||[http://amandakedaigle.weebly.com/ website]||||-|
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|Peter Freese||pfreese@mit.edu||2012||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Harvard College||Applied Mathematics - Biology||Post-transcriptional regulation of alternative splicing machinery||||||-|
|Peter Freese||pfreese@mit.edu||2012||[http://genes.mit.edu/burgelab/index.html Chris Burge]||Harvard College||Applied Mathematics - Biology||Post-transcriptional regulation of alternative splicing machinery||||||-|
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|Natasha Patel-Murray||nlpm@mit.edu||2013||[http://fraenkel.mit.edu Ernest Fraenkel]||University of Michigan||Mathematical Biology||TBD||||||-|
|Natasha Patel-Murray||nlpm@mit.edu||2013||[http://fraenkel.mit.edu Ernest Fraenkel]||University of Michigan||Mathematical Biology||TBD||||||-|
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|Jacob Witten||jswitten@mit.edu||2014||[http://biogels.mit.edu/ Katharina Ribbeck]||Amherst College||Biochemistry & Biophysics, Mathematics||TBD||||||-|
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|Cassandra Schaening-Burgos||axolotl@mit.edu||2014||[http://genes.mit.edu/burgelab/ Chris Burge],[http://gilbertlab.mit.edu/ Wendy Gilbert]||University of Puerto Rico||Computer Science||TBD||||||-|
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|Max Walt Shen||maxwshen@mit.edu||2015||||University of California, San Diego||Computer Science: Bioinformatics||TBD||||||-|

Latest revision as of 14:58, 11 January 2016

Click on the arrow atop each column to resort the table.

Name E-mail Class Lab UG Inst. UG Major Thesis Personal page Defended Currently
Sabrina Spencer spencers@mit.edu 2004 Peter Sorger The George Washington Univ Biology & French Literature Cell-to-cell variability in apoptosis website May, 2009 Postdoc at Stanford Univ
Grace Zheng gzheng@mit.edu 2004 Phil Sharp University of British Columbia Computer Science MicroRNA in Embryonic Stem Cells June, 2010 Postdoc at Stanford Univ
Laura Kleiman sontag@mit.edu 2004 Peter Sorger, Doug Lauffenburger Rutgers University Biomathematics Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics homepage April 9, 2010 Postdoc at Harvard Med
Lawrence David ldavid@mit.edu 2005 Eric Alm Columbia Univ. Biomedical Eng. Microbial genome evolutionary dynamics Website June, 2010 Asst. Prof. @ Duke
Robin Friedman robinf@mit.edu 2005 Chris Burge, David Bartel UCSD Computer Science & Bioinformatics The specificity and evolution of gene regulatory elements June, 2010 Postdoc at Institut Pasteur, Paris
B. Jesse Shapiro jesse1@mit.edu 2005 Eric Alm McGill University Biology Looking for signatures of natural selection in the microbial world [1] Sept, 2010 Postdoc at Harvard Public Health
Ramon Salsas Escat ramon12@mit.edu 2005 Collin Stultz Institut Quimic de Sarria (Barcelona, Spain) Chemistry Collagen conformational fluctuations and degradation June, 2010 Business development at Lipotec
Chandni Valiathan chandni@mit.edu 2005 Leona Samson Brandeis University Computer Science and Math Gene expression signatures for cell death or survival after DNA damage June, 2011
Shao Shan (Carol) Huang shhuang@salk.edu 2005 Ernest Fraenkel The University of British Columbia June, 2011 Postdoc at Salk Institute
Wesley Weng ycweng@MIT.edu 2005 Scott Manalis Cornell University Electrical & Computer Engr Mass Resonator Sensing of Cellular Dynamics March, 2012 UT Southwestern Medical School (MD program)
Orr Ashenberg orr@mit.edu 2006 Amy Keating,Michael Laub Harvard College Chemistry and Chemical Biology Protein Interaction Specificity in Histidine Kinases postdoc September, 2012 Flu Fighter
Emily Miraldi emiraldi@mit.edu 2006 Forest White Oberlin College Biochemistry Network level analysis of hepatic insulin signaling under high fat diet stress - -
Yuchun Guo yguo@mit.edu 2006 David Gifford Tsinghua University (China) Materials Science & Computer Science Transcriptional regulation in development of motor neurons from embryonic stem cells - -
Surasak Chunsrivirot fa833@mit.edu 2006 Bernhardt Trout MIT Chemistry Nucleation of Pharmaceutical Ingredient: a Computational Investigation June, 2011 Researcher at National Center for Genetic Engineering and Biotechnology (Thailand)
Charles Lin chazlin@mit.edu 2007 Chris Burge, Rick Young Duke University Biology and Physics Making sense of divergent transcription September, 2012 Research Fellow at Dana Farber Cancer Institute
Michelle Chan mwchan@mit.edu 2007 Aviv Regev University of British Columbia Computer Science & Microbiology Evolution of Transcriptional Modules in Yeast -
Jonathan Friedman yonatanf@mit.edu 2007 Eric Alm, Daniel Rothman Tel Aviv University Physics & Biology Composition of microbial communities -
Albert W. Cheng awcheng@mit.edu 2007 Chris Burge,Rudolf Jaenisch Hong Kong University of Science and Technology (HKUST) Biochemistry Gene regulation during cancer metastasis, early embryogenesis and somatic cell reprogramming homepage -
Naiyan Chen naiyan@mit.edu 2007 Mriganka Sur,Fatih Yanik Imperial College London Biomedical Engineering Cholinergic modulation in the cortex -
Yuanyuan Cui cuiyy@mit.edu 2007 Bruce Tidor Tsinghua University (China) Biology Construction and utilization of a Kronecker model for E.coli central carbon metabolic network -
Katherine Romer kromer@mit.edu 2008 David Page MIT Computer Science, Biology Regulation of sperm production in the mouse -
Christopher Negron cnegron@mit.edu 2008 Amy Keating The City College of New York Physics Design of coiled-coil interaction networks -
Christoph Engert christoph@mit.edu 2008 Robert Horvitz, Alexander van Oudenaarden Heidelberg University (GER) Mol. Biotech. Physics of Worm Development (Working Title) more... -
Ana Paula Leite apleite@mit.edu 2008 Aviv Regev University of Minho, Portugal Mathematics Integrative approaches for systematic reconstruction of regulatory circuits in mammals Sept, 2012 Research Associate at University College London (UCL)
Alex Robertson alexrson@mit.edu 2008 Chris Burge Stanford University Chemistry The role of pre-mRNA processing in regulation of gene expression -
Daniel Park dkpark@mit.edu 2008 Bonnie Berger UC Irvine Computer Science, Biology Comparative analysis of protein-protein interaction networks -
Jonathan Rameseder johnny@mit.edu 2008 Mike Yaffe Upper Austria University of Applied Sciences Bioinformatics Multivariate methods for the statistical analysis of hyperdimensional high-content screening data CV and contact info July, 2014 Data Scientist at Apple Inc., Cupertino, California
Chris Smillie csmillie@mit.edu 2009 Eric Alm University of Arizona Biology and Math Evolution and ecology of the human microbiome -
Vikram Agarwal vagarwal@mit.edu 2009 David Bartel University of Texas at Austin Biology Improving quantitative models of animal miRNA target prediction -
Xuebing Wu wuxbl@mit.edu 2009 Phil Sharp Tsinghua University (China) Computer Science & Bioinformatics High throughput mapping of RNA-RNA interactions homepage -
Anna Podgornaia anna2009@mit.edu 2009 Michael Laub UC Berkeley Biochemistry Sequence space of the two-component signaling interface September 2014
Zi Peng Fan zifan@mit.edu 2009 Richard Young Brandeis University Biochemistry Study of transcriptionally coherent clusters in the human embryonic stem cells -
Nathan Cermak cermak@mit.edu 2010 Scott Manalis, Martin Polz University of Washington Biochemistry, Applied Math, Sociology Marine microbe biomass accumulation home -
Thomas Gurry tg296@mit.edu 2010 Collin Stultz Imperial College London Biochemistry Formation of ordered multimers in intrinsically disordered proteins December 2014 Postdoc at MIT
Leyla Isik lisik@mit.edu 2010 Tomaso Poggio Johns Hopkins University Biomedical Engineering Timing of object recognition in the human visual system -
Manoshi Datta mdatta@mit.edu 2010 Jeff Gore UC Berkeley Bioengineering, Chemical Biology Understanding the effect of interspecies interactions of community structure and dynamics -
Shicong (Mimi) Xie xies@mit.edu 2010 Adam Martin UC Berkeley Physics, Applied Mathematics Coordination of cellular forces for morphogensis -
Arshed Al-Obeidi arshed@mit.edu 2010 Peter Sorger, Doug Lauffenburger University of Arizona Biology Mechanisms of cell death -
Sarah Spencer sjspence@mit.edu 2011 Eric Alm Washington University in St. Louis Biology TBD
Boyang Zhao bozhao@mit.edu 2011 Mike Hemann, Doug Lauffenburger University of Michigan, Ann Arbor Biomedical Engineering TBD homepage
Kelly Brock kbrock@mit.edu 2011 Jeremy England Harvard University Engineering Sciences TBD
Maxim Wolf mywolf@mit.edu 2011 Manolis Kellis University of Maryland Biology, Chemistry, Physics TBD
Thomas Willems twillems@mit.edu 2011 Doug Lauffenburger University of California-Berkeley Chemical Engineering TBD
Asa Adadey aadadey@mit.edu 2011 Chris Burge University of Maryland Baltimore County Bioinformatics & Computational Biology TBD
Derrick Sund dtsund@mit.edu 2011 TBD University of Arizona Mathematics, Biochemistry and Molecular Biophysics TBD
Amanda Kedaigle mandyjoy@mit.edu 2012 Ernest Fraenkel Wellesley College Bioinformatics Chromatin structure of Huntington's Disease website
Peter Freese pfreese@mit.edu 2012 Chris Burge Harvard College Applied Mathematics - Biology Post-transcriptional regulation of alternative splicing machinery
Mariana Matus mgmatus@mit.edu 2012 Eric Alm UNAM (MEX) & Wageningen (NL) Genomics & Biotechnology TBD
Colette L Picard cpicard@mit.edu 2012 Mary Gehring Cornell University Computational Biology & Statistics TBD
Vincent Xue vxue@mit.edu 2012 Amy Keating CUNY Hunter College Computer Science & Biology TBD
Nezar Abdennur nezar@mit.edu 2012 Manolis Kellis University of Ottawa Biochemistry, Mathematics & Bioinformatics TBD
Maria Alexis msalexis@mit.edu 2013 TBD Stanford University Biology TBD
Natasha Patel-Murray nlpm@mit.edu 2013 Ernest Fraenkel University of Michigan Mathematical Biology TBD
Jacob Witten jswitten@mit.edu 2014 Katharina Ribbeck Amherst College Biochemistry & Biophysics, Mathematics TBD
Cassandra Schaening-Burgos axolotl@mit.edu 2014 Chris Burge,Wendy Gilbert University of Puerto Rico Computer Science TBD
Max Walt Shen maxwshen@mit.edu 2015 University of California, San Diego Computer Science: Bioinformatics TBD
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