LncRNA ToDoList

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(February 3. 2012)
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==February 8, 2012==
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==February 23, 2012==
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H2AZ
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Joe
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set up a database and a wiki
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lncrna analysis with reduced cutoff at 0.5 from 1
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transcription factor & the dip of the histone modification
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==February 8,2012==
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h2az
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divide genes into different categories such as lncrnas , mirrnas , and some specific processes/pathways,

Revision as of 13:29, 23 February 2012

February 23, 2012

Joe


set up a database and a wiki

lncrna analysis with reduced cutoff at 0.5 from 1

transcription factor & the dip of the histone modification



February 8,2012

h2az

divide genes into different categories such as lncrnas , mirrnas , and some specific processes/pathways,


February 3, 2012

LncRNAs, their temproal nd spatial function in the regulation of expression.

1. There is a gap between day 3 and day 6, may add day 4 and 5 rna-seq data

2. There possibly a transition during day 1 and day 3 that lunch renascence and mirrnas are associated in early stage of differentiation

3. The network makes sense to the stage specific differentiation. However, add some mirrnasback to the network ?

4. Mesp4 is picked for downstreame study because mesp4 seems to be a master regulator in early stage at the starting point. There is a linear regulation leading to the carjacking differentiation.

5.does mesp1 overexpfession rescue the phenotype?

6. Does mesp1 knock outhave the samephenotype?

7. How lncrna affects expression?

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