LiguoWang: Difference between revisions

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==<span style="color:#0000ff"> '''Publications''' </span>==
==<span style="color:#0000ff"> '''Publications''' </span>==
* '''Wang, L''', Wang, S, Li, W RSeQC: Quality Control of RNA-seq experiments. Bioinformatics (2012) [http://www.ncbi.nlm.nih.gov/pubmed/22743226 PubMed]
* '''Wang, L''', Wang, S, Li, W RSeQC: Quality Control of RNA-seq experiments. Bioinformatics (2012) [http://www.ncbi.nlm.nih.gov/pubmed/22743226 PubMed]
* Zhang, C., '''Wang L. (joint first author)''', et al. (2011) Definition of a FoxA1 Cistrome that is Crucial for G1-S Phase Cell- Cycle Transit in Castration-Resistant Prostate Cancer. Cancer Res. (Joint first author) [http://www.ncbi.nlm.nih.gov/pubmed?term=21900400 PubMed]
* Zhang, C., '''Wang L (joint first author)''', et al. (2011) Definition of a FoxA1 Cistrome that is Crucial for G1-S Phase Cell- Cycle Transit in Castration-Resistant Prostate Cancer. Cancer Res. [http://www.ncbi.nlm.nih.gov/pubmed?term=21900400 PubMed]


* Kannan, K., '''Wang L. (joint first author)''', et al. (2011) Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing. PNAS 108(22): 9172-7 (Joint first author) [http://www.ncbi.nlm.nih.gov/pubmed?term=21571633 PubMed]
* Kannan, K., '''Wang L (joint first author)''', et al. (2011) Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing. PNAS 108(22): 9172-7 [http://www.ncbi.nlm.nih.gov/pubmed?term=21571633 PubMed]


* Klisch, T. J., Xi, Y., Flora, A., '''Wang, L.''', Li, W., and Zoghbi, H. Y. (2011) In vivo Atoh1 targetome reveals how a proneural transcription factor regulates cerebellar development. PNAS 108, 3288-3293. [http://www.ncbi.nlm.nih.gov/pubmed?term=21300888 PubMed]
* Klisch, T. J., Xi, Y., Flora, A., '''Wang, L''', Li, W., and Zoghbi, H. Y. (2011) In vivo Atoh1 targetome reveals how a proneural transcription factor regulates cerebellar development. PNAS 108, 3288-3293. [http://www.ncbi.nlm.nih.gov/pubmed?term=21300888 PubMed]


* Daines, B., Wang, H., '''Wang, L. (joint first author)''', et al. (2011) The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res 21, 315-324. (Joint First anthor) [http://www.ncbi.nlm.nih.gov/pubmed?term=21177959 PubMed]
* Daines, B., Wang, H., '''Wang, L (joint first author)''', et al. (2011) The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res 21, 315-324. [http://www.ncbi.nlm.nih.gov/pubmed?term=21177959 PubMed]


* Chen, Z., '''Wang, L. (joint first author)''', Wang, Q., and Li, W. (2010) Histone modifications and chromatin organization in prostate cancer. Epigenomics 2, 551-560. (Joint First author). [http://www.ncbi.nlm.nih.gov/pubmed/21318127 PubMed]
* Chen, Z., '''Wang, L (joint first author)''', Wang, Q., and Li, W. (2010) Histone modifications and chromatin organization in prostate cancer. Epigenomics 2, 551-560. [http://www.ncbi.nlm.nih.gov/pubmed/21318127 PubMed]


* Rainer B. Lanz, Yaroslava Bulynko, Anna Malovannaya, Paul Labhart, '''Wang L.''', Wei Li, Jun Qin, Mary Harper and Bert W. O'Malley. (2010) Global Characterization of Transcriptional Impact of the SRC-3 Coregulator. Molecular Endocrinology. Mol Endocrinol 24(4): 859-72. [http://www.ncbi.nlm.nih.gov/pubmed?term=20181721 PubMed]
* Rainer B. Lanz, Yaroslava Bulynko, Anna Malovannaya, Paul Labhart, '''Wang L.''', Wei Li, Jun Qin, Mary Harper and Bert W. O'Malley. (2010) Global Characterization of Transcriptional Impact of the SRC-3 Coregulator. Molecular Endocrinology. Mol Endocrinol 24(4): 859-72. [http://www.ncbi.nlm.nih.gov/pubmed?term=20181721 PubMed]
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* '''Wang L.''', L. HAO, X. LI, S. HU, S. GE & J. YU. (2009) SNP deserts of Asian cultivated rice: genomic regions under domestication. J Evolution Biol. [http://www.ncbi.nlm.nih.gov/pubmed?term=19243488 PubMed]
* '''Wang L.''', L. HAO, X. LI, S. HU, S. GE & J. YU. (2009) SNP deserts of Asian cultivated rice: genomic regions under domestication. J Evolution Biol. [http://www.ncbi.nlm.nih.gov/pubmed?term=19243488 PubMed]
* Li X, Tan L, '''Wang L,''' Hu, S. & Sun, C. Isolation and characterization of conserved
* Li X, Tan L, '''Wang L,''' Hu, S. & Sun, C. Isolation and characterization of conserved non-coding sequences among rice (Oryza sativa L.) paralogous regions. Mol Genet Genomics 281:11-18 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18825415 Pubmed]
non-coding sequences among rice (Oryza sativa L.) paralogous regions. Mol Genet
Genomics 281:11-18 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18825415 Pubmed]
* Wang W, Meng B, Ge X, Song S, Yang Y, Yu X, '''Wang L.''', Hu S, Liu S, Yu J. Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines. Proteomics 8: 4808-21 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18850630 PubMed]
* Wang W, Meng B, Ge X, Song S, Yang Y, Yu X, '''Wang L.''', Hu S, Liu S, Yu J. Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines. Proteomics 8: 4808-21 (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18850630 PubMed]


==<span style="color:#0000ff"> '''Software''' </span>==
==<span style="color:#0000ff"> '''Software''' </span>==
* [http://code.google.com/p/rseqc/ RSeQC]: Evaluate Experiment of RNA-seq. This package performs comprehensive quality control for your RNA-seq data
* [http://code.google.com/p/rseqc/ RSeQC]: Evaluate Experiment of RNA-seq. This package performs comprehensive quality control for your RNA-seq data

Revision as of 13:14, 2 July 2012

Contact Information

  • Wang,Liguo
  • BCM, Baylor College of Medicine
  • One Baylor Plaza, Houston, TX 77030, USA
  • Houston, Texas, USA.
  • Email me through liguow@bcm.edu
  • I work in Wei Li's lab at Baylor College of Medicine.

Education & Experience

  • Postdoc Associate, 06/2008 - 06/2012 Division of Biostatistics and Informatics. Baylor College of Medicine
  • Ph.D., Bioinformatics, Beijing Genomics Institute (BGI) Chinese Academy of Sciences, 2009
  • M.S., Bioinformatics, Beijing Genomics Institute (BGI) Chinese Academy of Sciences, 2005
  • B.S., Biotechnology, Xuzhou Normal University, Jiangsu 221116, China. 2003

Research interests

  • Field: Computational biology, Bioinformatics
  • Technologies: High-throughput sequencing. RNA-seq, ChIP-seq, DNA methylation, Microarray
  • Diseases: Prostate cancer/Breast cancer/Leukemia, heart disease,
  • Mechanism: Alternative splicing and diseases such as cancer.

Publications

  • Wang, L, Wang, S, Li, W RSeQC: Quality Control of RNA-seq experiments. Bioinformatics (2012) PubMed
  • Zhang, C., Wang L (joint first author), et al. (2011) Definition of a FoxA1 Cistrome that is Crucial for G1-S Phase Cell- Cycle Transit in Castration-Resistant Prostate Cancer. Cancer Res. PubMed
  • Kannan, K., Wang L (joint first author), et al. (2011) Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing. PNAS 108(22): 9172-7 PubMed
  • Klisch, T. J., Xi, Y., Flora, A., Wang, L, Li, W., and Zoghbi, H. Y. (2011) In vivo Atoh1 targetome reveals how a proneural transcription factor regulates cerebellar development. PNAS 108, 3288-3293. PubMed
  • Daines, B., Wang, H., Wang, L (joint first author), et al. (2011) The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res 21, 315-324. PubMed
  • Chen, Z., Wang, L (joint first author), Wang, Q., and Li, W. (2010) Histone modifications and chromatin organization in prostate cancer. Epigenomics 2, 551-560. PubMed
  • Rainer B. Lanz, Yaroslava Bulynko, Anna Malovannaya, Paul Labhart, Wang L., Wei Li, Jun Qin, Mary Harper and Bert W. O'Malley. (2010) Global Characterization of Transcriptional Impact of the SRC-3 Coregulator. Molecular Endocrinology. Mol Endocrinol 24(4): 859-72. PubMed
  • Wang L., Xi Y, Yu J, Dong L, Yen L, Li W. (2010) A Statistical Method for the Detection of Alternative Splicing Using RNA-Seq. PLoS ONE 5(1): e8529. PubMed
  • Wang L., L. HAO, X. LI, S. HU, S. GE & J. YU. (2009) SNP deserts of Asian cultivated rice: genomic regions under domestication. J Evolution Biol. PubMed
  • Li X, Tan L, Wang L, Hu, S. & Sun, C. Isolation and characterization of conserved non-coding sequences among rice (Oryza sativa L.) paralogous regions. Mol Genet Genomics 281:11-18 (2008) Pubmed
  • Wang W, Meng B, Ge X, Song S, Yang Y, Yu X, Wang L., Hu S, Liu S, Yu J. Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines. Proteomics 8: 4808-21 (2008) PubMed

Software

  • RSeQC: Evaluate Experiment of RNA-seq. This package performs comprehensive quality control for your RNA-seq data
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