Lidstrom:MM1/MM2/MM3/HY

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(What is the difference between MM1/MM2/MM3/HY?=)
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== What is the difference between MM1/MM2/MM3/HY?==
== What is the difference between MM1/MM2/MM3/HY?==
* They all have the same trace elements solution.  The primary difference is the nitrogen source:
* They all have the same trace elements solution.  The primary difference is the nitrogen source:
-
** MM1/HY uses nitrate
+
** MM1/HY uses ammonium
-
** MM2 uses ammonium
+
** MM2 uses nitrate
** MM3 has no added nitrogen
** MM3 has no added nitrogen
*** MM3 is used when growing on methylamine, which releases N as it is metabolized
*** MM3 is used when growing on methylamine, which releases N as it is metabolized

Revision as of 17:34, 2 May 2013

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What is the difference between MM1/MM2/MM3/HY?

  • They all have the same trace elements solution. The primary difference is the nitrogen source:
    • MM1/HY uses ammonium
    • MM2 uses nitrate
    • MM3 has no added nitrogen
      • MM3 is used when growing on methylamine, which releases N as it is metabolized

If all organisms assimilate N into biomass as NH4+ why do we give them MM3?

  • This is an interesting question, as the organisms must convert nitrate (NO3-) into ammonium to assimilate it. Two likely factors:
    • Ammonium is too toxic
      • In methanotrophs, it interferes with pMMO (methane assimilation enzyme). We don't have a tested hypothesis for why ammonium would be toxic to methylotroph.
    • They prefer to convert nitrate to ammonium (using NADH) to release energy, as they have an excess of NADH due to their metabolic strategy.

Why don't we have a media with nitrite?

  • It is toxic.
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