Li Lab:Softwares
From OpenWetWare
- Model-based Analysis of Tiling-array (MAT) (PNAS 2006)
- Cis-regulatory Element Annotation System (CEAS) (Nucleic Acids Res 2006)
- Model-based Analysis of ChIP-sequencing (MACS) (Genome Biology 2008)
- BSMAP/RRBSmap: whole genome (RRBS) Bisulfite Sequence MAPping program (BMC Bioinformatics 2009; Bioinformatics 2012)
- RSeQC: Quality Control of RNA-seq experiments (Bioinformatics 2012)
- DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing (Genome Research 2013)
- CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model (Nucleic Acids Res 2013)
- BSeQC: Quality Control of Bisulfite Sequencing Experiments (Bioinformatics 2013)