Li Lab:Softwares: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
Wei Li Bcm (talk | contribs) No edit summary |
Wei Li Bcm (talk | contribs) No edit summary |
||
| Line 2: | Line 2: | ||
<div style=" width: 1024px;background-color: #dddddd" "> | <div style=" width: 1024px;background-color: #dddddd" "> | ||
== Epigenomics == | == Epigenomics == | ||
| Line 31: | Line 28: | ||
* [http://chipexo.sourceforge.net MACE]: Model Based Analysis of [http://en.wikipedia.org/wiki/ChIP-exo ChIP-exo] | * [http://chipexo.sourceforge.net MACE]: Model Based Analysis of [http://en.wikipedia.org/wiki/ChIP-exo ChIP-exo] | ||
* [http://code.google.com/p/moabs/ MOABS]: MOdel based Analysis of Bisulfite Sequencing data | |||
| Line 42: | Line 41: | ||
* [https://code.google.com/p/dapars/ DaPars]: Dynamic analysis of Alternative PolyAdenylation from RNA-seq | * [https://code.google.com/p/dapars/ DaPars]: Dynamic analysis of Alternative PolyAdenylation from RNA-seq | ||
Revision as of 21:54, 28 September 2013
Epigenomics
- MAT: Model-based Analysis of Tiling-array (PNAS 2006)
- CEAS: Cis-regulatory Element Annotation System (Nucleic Acids Res 2006)
- MACS: Model-based Analysis of ChIP-sequencing (Genome Biology 2008)
- BSMAP/RRBSmap: Whole genome (RRBS) Bisulfite Sequence MAPping program (BMC Bioinformatics 2009; Bioinformatics 2012)
- DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing (Genome Research 2013)
- BSeQC: Quality Control of Bisulfite Sequencing Experiments (Bioinformatics 2013)
- DyChIPS: An integrate solution for dynamic analysis of ChIP-sequencing
- MOABS: MOdel based Analysis of Bisulfite Sequencing data
Transcriptomics
- RSeQC: Quality Control of RNA-seq experiments (Bioinformatics 2012)
- CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model (Nucleic Acids Res 2013)
- DaPars: Dynamic analysis of Alternative PolyAdenylation from RNA-seq
