Li Lab:People: Difference between revisions

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A lab is a nurturing environment that aims to maximize the potential of students as scientists and as human beings.  -- '''Uri Alon'''
A lab is a nurturing environment that aims to maximize the potential of students as scientists and as human beings.  -- '''Uri Alon''' <br/>
[https://www.icloud.com/photostream/#A4JtdOXmGZvmDp '''Lab Pictures'''] 


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<h3>PI:[http://www.bcm.edu/mcb/?PMID=7802 Wei Li] (李蔚), PhD</h3>
<h3>PI:[http://www.bcm.edu/mcb/?PMID=7802 Wei Li] (李蔚), PhD</h3>
   
   


[[Image: Li_wei.jpg‎|center|150px|]]  
[[Image: Li_wei.jpg‎|center|150px|]]  
'''Associate Professor''' (tenured): 10/2011 - present<br/>
'''Endowed Chair and Professor of Bioinformatics''':2019 - <br/>
Department of Biological Chemistry<br/>
School of Medicine<br/>
University of California, Irvine<br/>
 
'''Dan L Duncan Chair Professor''':07/2018 - 2019<br/>
'''Professor''' (tenured): 08/2016 - present<br/>
'''Associate Professor''' (tenured): 10/2011 - 07/2016<br/>
'''Assistant Professor''' (tenure track): 11/2007 - 09/2011<br/>
'''Assistant Professor''' (tenure track): 11/2007 - 09/2011<br/>
Division of Biostatistics, Dan L. Duncan Cancer Center<br/>
Division of Biostatistics, Dan L. Duncan Cancer Center<br/>
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'''Postdoctoral Fellow''':    06/2004 - 10/2007<br/>
'''Postdoctoral Fellow''':    06/2004 - 10/2007<br/>
Advisor: Prof. Xiaole Shirley Liu<br/>
Department of Biostatistics and Computational Biology<br/>
Department of Biostatistics and Computational Biology<br/>
Dana Farber Cancer Institute<br/>
Dana Farber Cancer Institute<br/>
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'''Ph.D. in Bioinformatics''':  09/1998 - 09/2003<br/>
'''Ph.D. in Bioinformatics''':  09/1998 - 09/2003<br/>
Advisor: Prof. Runsheng Chen<br/>
Institute of Biophysics<br/>
Institute of Biophysics<br/>
Chinese Academy of Sciences, Beijing, China  
Chinese Academy of Sciences, Beijing, China  
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<h3>Instructors </h3>  
<h3>Instructors </h3>  


* Yuanxin Xi, PhD
Ph.D. in Bioinformatics, University of California, Davis
[[Image: YxiBCM.tif|center|150px|]]




<h3>Postdoctoral Fellows </h3>


* [http://kaifu.openwetware.org/ Kaifu Chen, PhD]
Ph.D. in Genomics & Bioinformatics, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
[[Image: kaifu.jpg|center|150px|]]


* Jie Lyu, PhD (01/2016)
Ph.D. in Biomedical Engineering, Harbin Institute of Technology, China.
[[Image: Jielv.jpg |center|150px|]]




* Zheng Xia, PhD (夏铮)
* Lei Li, PhD (08/2016)
Ph.D. in Control Theory and Engineering, Zhejiang University, China
PhD in Computational Biology, The Chinese University of Hong Kong
[[Image: Zheng.JPG|center|150px|]]  
[[Image: Lei.jpg |center|150px|]]




* Jiejun Shi, PhD (08/2016)
PhD in Biology, Tongji University, Shanghai, China
[[Image: Jiejun_Shi.jpeg |center|150px|]]


* Teresa T. Yiu, PhD (NCI R25T fellow)
PhD in Biochemistry & Molecular Biology, M. D. Anderson Cancer Center
[[Image: Teresa.jpg |center|150px|]]




<h3>Postdoctoral Fellows </h3>
*Dapeng Hao, PhD
Ph.D. in Biomedical Sciences, University of Macau
[[Image: Dapeng.jpg |center|150px|]]


* Hyun Jung Park, PhD
Ph.D. in Computer Science, Rice University
[[Image: HJInDenver.jpg|center|150px|]]


*Ya Cui, PhD (09/2018)
PhD in Computational Biology, Institute of Biophysics, Chinese Academy of Sciences
[[Image: yacui.png |center|150px|]]




* Benjamin Rodriguez, PhD
PhD in Integrated Biomedical Science, the Ohio State Univ
[[Image: BenBCM.jpeg |center|150px|]]


*Yumei Li, PhD (09/2019)
PhD in Molecular Medicine, Peking University
[[Image: Yumei_Li.jpg |center|150px|]]


* Jianzhong Su, PhD
PhD in Computational Epigenetics and Biological Mathematics, Harbin Institute of Technology, China.
[[Image: Jianzhong.png |center|150px|]]


<h3>Graduate Students</h3>


<h3>Graduate Students</h3>
*Jianfeng Xu (02/2016)
3rd year graduate student, Molecular & Cellular Biology
[[Image:jianx.jpg|center|150px|]]


* Xueqiu Lin (Tongji University)
[[Image: Xueqiulin.jpg|center|150px|]]


*Fanglue Peng
Graduate student, Molecular & Cellular Biology  <br/>
Co-mentored with Dr. Xi Chen
[[Image:fanglue1.jpg|center|150px|]]




*Yipeng Gao (02/2018)
1st year Graduate Student, Quantitative & Computational Biosciences
[[Image:yipeng.jpg|center|150px|]]


<h3>System Admin (High Performance Computing)</h3>
* Michael D. Dehart
B.S. in Computer Science, University of Houston Clear Lake
[[Image: Michael.JPG‎|center|150px|]]




<h3> Lab Alumni </h3>  
<h3> Lab Alumni </h3>  
* Liguo Wang, PhD
Postdoc Fellow: 06/2008 - 06/2012<br/>Current Position: Assistant Professor at Mayo Clinic
[[Image: Liguow.jpg|center|150px|]]


* [http://www.mayo.edu/research/faculty/wang-liguo-ph-d/bio-00055202 Liguo Wang, PhD]
Postdoc Fellow: 06/2008 - 06/2012<br/>Current Position: tenure-track Assistant Professor at Mayo Clinic
* [http://www.ibt.tamhsc.edu/faculty/sun-bio.html  Deqiang Sun, PhD]
Postdoc Fellow: 2010 - 2014 <br/>
Current Position: tenure-track Assistant Professor at Texas A&M IBT
* [http://chenlab.openwetware.org Kaifu Chen, PhD]
Postdoc Fellow: 2009-2013; instructor: 2013-2015 <br/>
Current Position: tenure-track Assistant Professor at Weill Cornell Medicine & Methodist Hospital
* Yuanxin Xi, PhD
Postdoc/Instructor: 2008-2016  <br/>
Current Position: tenure-track Assistant Professor at UT Health (declined); now at MD Anderson
* [http://xiazlab.org/index.html Zheng Xia, PhD 夏铮 (CPRIT Keck Fellow)]
Postdoc/Instructor: 2011-2016 <br/>
Current Position: tenure-track Assistant Professor at Oregon Health & Science University (OHSU)
* [https://www.publichealth.pitt.edu/home/directory/hyun-jung-park Hyun Jung Park, PhD (朴贤正)]
Ph.D. in Computer Science, Rice University<br/>
Postdoc: 2012-2017 <br/>
Current Position: tenure-track Assistant Professor at University of Pittsburgh Medical Center (UPMC)
* [http://sulab.info  Jianzhong Su, PhD]
PhD in Computational Epigenetics and Biological Mathematics, Harbin Institute of Technology, China.
Postdoc: 2014-2018 <br/>
Current Position: Professor at Wenzhou Medical University http://sulab.info
* Xueqiu Lin (Tongji University)
* Xiaodong Cui, PhD
PhD in Electrical and Computer Engineering, University of Texas at San Antonio
Postdoc: 2016-2018
* Xin Feng, PhD
Ph.D. in Biomedical Engineering, Stony Brook University
Postdoc: 2016-2018
<h4> Lab Alumni (co-mentored by Wei) </h4>
* Benjamin Rodriguez, PhD
Postdoc Fellow (co-mentored with Peggy Goodell)
Current Position: Fellow at NIH


* Kadir Caner Akdemir  
* Kadir Caner Akdemir  
PhD student (co-mentored with Michelle Barton): 2011 - 2013 <br/>
PhD student (co-mentored with Michelle Barton): 2011 - 2013 <br/>
Current Position: Postdoc Fellow at UT MD Anderson Cancer Center
Current Position: Postdoc Fellow at UT MD Anderson Cancer Center
[[Image: Kadir.jpg|center|150px|]]


* Zeynep H Coban (co-mentored with Michelle Barton)
* Zeynep H Coban (co-mentored with Michelle Barton)
PhD student, UT MD Anderson Cancer Center, Houston, TX <br/>
PhD student, UT MD Anderson Cancer Center, 2011-2014 <br/>
Current Position: Postdoc Fellow at Baylor
Current Position: Postdoc Fellow at Baylor
[[Image: Zeynep.jpg|center|150px|]]


 
* Teresa T. Yiu, PhD  
* [http://sun.openwetware.org Deqiang Sun, PhD]
instructor: 2014-2015 (NCI R25T fellow; co-mentored with Melissa Bondy)<br/>Current Position: Teacher in a private school
Postdoc Fellow: 2010 - 2014 <br/>
Current Position: Assistant Professor
[[Image: Test2.png|center|150px|]]

Latest revision as of 11:42, 4 March 2021

Home        People        Publications        Collaborations        Software        Positions        Contact       


A lab is a nurturing environment that aims to maximize the potential of students as scientists and as human beings. -- Uri Alon
Lab Pictures

PI:Wei Li (李蔚), PhD


Endowed Chair and Professor of Bioinformatics:2019 -
Department of Biological Chemistry
School of Medicine
University of California, Irvine

Dan L Duncan Chair Professor:07/2018 - 2019
Professor (tenured): 08/2016 - present
Associate Professor (tenured): 10/2011 - 07/2016
Assistant Professor (tenure track): 11/2007 - 09/2011
Division of Biostatistics, Dan L. Duncan Cancer Center
Department of Molecular and Cellular Biology
Baylor College of Medicine.

Postdoctoral Fellow: 06/2004 - 10/2007
Advisor: Prof. Xiaole Shirley Liu
Department of Biostatistics and Computational Biology
Dana Farber Cancer Institute
Harvard School of Public Health, Boston

Bioinformatics Group Leader: 01/2000 - 05/2004
Beijing Genomics Institute (BGI)
Chinese Academy of Sciences, Beijing, China

Ph.D. in Bioinformatics: 09/1998 - 09/2003
Advisor: Prof. Runsheng Chen
Institute of Biophysics
Chinese Academy of Sciences, Beijing, China


Instructors


Postdoctoral Fellows


  • Jie Lyu, PhD (01/2016)

Ph.D. in Biomedical Engineering, Harbin Institute of Technology, China.


  • Lei Li, PhD (08/2016)

PhD in Computational Biology, The Chinese University of Hong Kong


  • Jiejun Shi, PhD (08/2016)

PhD in Biology, Tongji University, Shanghai, China


  • Dapeng Hao, PhD

Ph.D. in Biomedical Sciences, University of Macau


  • Ya Cui, PhD (09/2018)

PhD in Computational Biology, Institute of Biophysics, Chinese Academy of Sciences


  • Yumei Li, PhD (09/2019)

PhD in Molecular Medicine, Peking University


Graduate Students

  • Jianfeng Xu (02/2016)

3rd year graduate student, Molecular & Cellular Biology


  • Fanglue Peng

Graduate student, Molecular & Cellular Biology
Co-mentored with Dr. Xi Chen


  • Yipeng Gao (02/2018)

1st year Graduate Student, Quantitative & Computational Biosciences


Lab Alumni

Postdoc Fellow: 06/2008 - 06/2012
Current Position: tenure-track Assistant Professor at Mayo Clinic

Postdoc Fellow: 2010 - 2014
Current Position: tenure-track Assistant Professor at Texas A&M IBT

Postdoc Fellow: 2009-2013; instructor: 2013-2015
Current Position: tenure-track Assistant Professor at Weill Cornell Medicine & Methodist Hospital

  • Yuanxin Xi, PhD

Postdoc/Instructor: 2008-2016
Current Position: tenure-track Assistant Professor at UT Health (declined); now at MD Anderson

Postdoc/Instructor: 2011-2016
Current Position: tenure-track Assistant Professor at Oregon Health & Science University (OHSU)

Ph.D. in Computer Science, Rice University
Postdoc: 2012-2017
Current Position: tenure-track Assistant Professor at University of Pittsburgh Medical Center (UPMC)

PhD in Computational Epigenetics and Biological Mathematics, Harbin Institute of Technology, China. Postdoc: 2014-2018
Current Position: Professor at Wenzhou Medical University http://sulab.info

  • Xueqiu Lin (Tongji University)
  • Xiaodong Cui, PhD

PhD in Electrical and Computer Engineering, University of Texas at San Antonio Postdoc: 2016-2018

  • Xin Feng, PhD

Ph.D. in Biomedical Engineering, Stony Brook University Postdoc: 2016-2018


Lab Alumni (co-mentored by Wei)

  • Benjamin Rodriguez, PhD

Postdoc Fellow (co-mentored with Peggy Goodell) Current Position: Fellow at NIH

  • Kadir Caner Akdemir

PhD student (co-mentored with Michelle Barton): 2011 - 2013
Current Position: Postdoc Fellow at UT MD Anderson Cancer Center

  • Zeynep H Coban (co-mentored with Michelle Barton)

PhD student, UT MD Anderson Cancer Center, 2011-2014
Current Position: Postdoc Fellow at Baylor

  • Teresa T. Yiu, PhD

instructor: 2014-2015 (NCI R25T fellow; co-mentored with Melissa Bondy)
Current Position: Teacher in a private school