LeBauer:Software/Statistics: Difference between revisions
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*'''coda''' tools for analysis of mcmc chains | *'''coda''' tools for analysis of mcmc chains | ||
*'''randtoolbox''' has function for generating pseudo-random samples; the [http://en.wikipedia.org/wiki/Halton_sequence halton()] function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the [http://128.174.125.122/wiki/index.php/ED2_Documentation ED2 ecosystem model]. | *'''randtoolbox''' has function for generating pseudo-random samples; the [http://en.wikipedia.org/wiki/Halton_sequence halton()] function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the [http://128.174.125.122/wiki/index.php/ED2_Documentation ED2 ecosystem model]. | ||
*[http://www.bioconductor.org/packages/2.2/bioc/html/EBImage.html '''EBImage'''] for image analysis | |||
<pre> | |||
$ R | |||
> source("http://bioconductor.org/biocLite.R") | |||
> biocLite("EBImage") | |||
</pre> | |||
==JAGS== | ==JAGS== | ||
=====Installing Jags packages (rjags and R2jags) in R===== | =====Installing Jags packages (rjags and R2jags) in R===== | ||
Revision as of 15:35, 28 July 2010
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R
R packages
- ggplot2 simplifies graphical data visualization and presentation
- coda tools for analysis of mcmc chains
- randtoolbox has function for generating pseudo-random samples; the halton() function produces a pseudo-random over-dispersed matrix that I use to sampling from the distributions of ~20 parameters used in ensemble runs of the ED2 ecosystem model.
- EBImage for image analysis
$ R
> source("http://bioconductor.org/biocLite.R")
> biocLite("EBImage")
JAGS
Installing Jags packages (rjags and R2jags) in R
wget http://cran.r-project.org/src/contrib/R2jags_0.01-26.tar.gz sudo R CMD INSTALL R2jags_0.01-26.tar.gz wget http://cran.r-project.org/src/contrib/rjags_1.0.3-11.tar.gz sudo R CMD INSTALL rjags_1.0.3-11.tar.gz
