Kristen M. Horstmann Lab Notebook: Difference between revisions
Line 22: | Line 22: | ||
<br>AvgLogFC_t90......-1.85025 | <br>AvgLogFC_t90......-1.85025 | ||
<br>AvgLogFC_t120......-1.867425 | <br>AvgLogFC_t120......-1.867425 | ||
-Sanity check for ZAP1 | |||
p < 0.05......2559 | |||
p < 0.01......1683 | |||
p < 0.001......953 | |||
p < 0.0001......521 | |||
Bonferroni p < 0.05......251 | |||
B-H p < 0.05......1859 | |||
unadjusted p-value.....6.06E-08 | |||
Bonferroni p-value......0.000374851 | |||
B-H p-value......6.15E-06 | |||
AvgLogFC_t15......3.8996 | |||
AvgLogFC_t30......3.7238 | |||
AvgLogFC_t60......3.962775 | |||
AvgLogFC_t90......-2.156 | |||
AvgLogFC_t120......0.0542 |
Revision as of 12:07, 11 October 2015
October 11, 2015
Finally made electronic notebook, will be posting work from previous weeks.
- Began work on updated Microarray data analysis workflow: Dahlquist:Microarray Data Analysis Workflow
- Completed steps 4-5, began step 6, Statistical Analysis, by creating the Excel sheet. Workflow was followed up until heading "Within-Strain ANOVA." Excel sheet was saved on Google Drive
There were 41,998 deletions of #VALUE! in the Excel sheet.
-Sanity check for GLN3
Sanity Check
p < 0.05......2255
p < 0.01......1325
p < 0.001......616
p < 0.0001......259
Bonferroni p < 0.05......106
B-H p < 0.05......1356
For NSR1
unadjusted p-value......0.00050676
Bonferroni p-value......1
B-H p-value......0.00660287
AvgLogFC_t15......3.506225
AvgLogFC_t30......4.5319
AvgLogFC_t60......2.7592
AvgLogFC_t90......-1.85025
AvgLogFC_t120......-1.867425
-Sanity check for ZAP1
p < 0.05......2559 p < 0.01......1683 p < 0.001......953 p < 0.0001......521 Bonferroni p < 0.05......251 B-H p < 0.05......1859
unadjusted p-value.....6.06E-08
Bonferroni p-value......0.000374851
B-H p-value......6.15E-06
AvgLogFC_t15......3.8996
AvgLogFC_t30......3.7238
AvgLogFC_t60......3.962775
AvgLogFC_t90......-2.156
AvgLogFC_t120......0.0542