Koch Lab:Protocols/Loading rate clamp
From OpenWetWare
Calculation of instantaneous stiffness correction factor (G)
Picture of LabVIEW code
LabVIEW VI
Code documentation from early 2003
Here is the documentation from my LabVIEW sub-VI which calculates the "G" value, which is used in the loading rate clamp for unzipping DNA:
G is defined as "inverse of compliance per nm of ssDNA"...uh? say what?
G is basically stiffness multiplied by contour length, so that it has units of pN, and is independent of length of ssDNA.
The model is Smith, et al. FJC with stretch modulus.
I solved the equations by hand, but verified numerically that they are correct (to within a very small percentage, which is as careful as i was about numerical derivative)
I have added code so that it works above F = 5000 pN, but I'm not sure it's correct (who cares?)