Koch Lab:Data - Revision history

Steven J. Koch: /* Microtubule Gliding Assay Data */

Steven J. Koch — Thu, 13 May 2010 22:56:37 GMT

Microtubule Gliding Assay Data

←Older revision		Revision as of 22:56, 13 May 2010
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	** Data available as *.dat text files here: http://kochlab.org/files/data/MTD		** Data available as *.dat text files here: http://kochlab.org/files/data/MTD
	** Instructions, descriptions, software available on request and we will continue working on posting them.		** Instructions, descriptions, software available on request and we will continue working on posting them.
-	* [[Koch Lab:Data/MT Gliding Assay Readme File]]	+	* [[Koch Lab:Data/MT Gliding Assay Readme File\|Microtubule Gliding Assay Readme File]]

	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==

Steven J. Koch at 22:56, 13 May 2010

Steven J. Koch — Thu, 13 May 2010 22:56:14 GMT

←Older revision		Revision as of 22:56, 13 May 2010
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	** Data available as *.dat text files here: http://kochlab.org/files/data/MTD		** Data available as *.dat text files here: http://kochlab.org/files/data/MTD
	** Instructions, descriptions, software available on request and we will continue working on posting them.		** Instructions, descriptions, software available on request and we will continue working on posting them.
-	* [[/Readme File]]	+	* [[Koch Lab:Data/MT Gliding Assay Readme File]]

	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==

Steven J. Koch: /* Microtubule Gliding Assay Data */

Steven J. Koch — Thu, 13 May 2010 22:51:58 GMT

Microtubule Gliding Assay Data

←Older revision		Revision as of 22:51, 13 May 2010
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	** Data available as *.dat text files here: http://kochlab.org/files/data/MTD		** Data available as *.dat text files here: http://kochlab.org/files/data/MTD
	** Instructions, descriptions, software available on request and we will continue working on posting them.		** Instructions, descriptions, software available on request and we will continue working on posting them.
		+	* [[/Readme File]]

	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==

Steven J. Koch: /* KochLab Data */

Steven J. Koch — Thu, 13 May 2010 20:58:33 GMT

KochLab Data

←Older revision		Revision as of 20:58, 13 May 2010
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	==KochLab Data==		==KochLab Data==
-	<html<!-- Open Data Link -->	+	<html><!-- Open Data Link -->
	<a href="http://opendefinition.org/">		<a href="http://opendefinition.org/">
	<img alt="This material is Open Data" border="0"		<img alt="This material is Open Data" border="0"

Steven J. Koch: /* KochLab Data */

Steven J. Koch — Thu, 13 May 2010 20:58:18 GMT

KochLab Data

←Older revision		Revision as of 20:58, 13 May 2010
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	==KochLab Data==		==KochLab Data==
-	<html><p xmlns:dct="http://purl.org/dc/terms/" xmlns:vcard="http://www.w3.org/2001/vcard-rdf/3.0#">	+	<html<!-- Open Data Link -->
		+	<a href="http://opendefinition.org/">
		+	<img alt="This material is Open Data" border="0"
		+	src="http://m.okfn.org/images/ok_buttons/od_80x15_blue.png" />
		+	</a>
		+	<!-- /Open Data Link -->
		+	<p xmlns:dct="http://purl.org/dc/terms/" xmlns:vcard="http://www.w3.org/2001/vcard-rdf/3.0#">
	<a rel="license" href="http://creativecommons.org/publicdomain/zero/1.0/">		<a rel="license" href="http://creativecommons.org/publicdomain/zero/1.0/">
	<img src="http://i.creativecommons.org/l/zero/1.0/88x31.png" style="border-style: none;" alt="CC0" />		<img src="http://i.creativecommons.org/l/zero/1.0/88x31.png" style="border-style: none;" alt="CC0" />

Steven J. Koch: /* Microtubule Gliding Assay Data */

Steven J. Koch — Thu, 13 May 2010 20:54:54 GMT

Microtubule Gliding Assay Data

←Older revision		Revision as of 20:54, 13 May 2010
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	* Raw Image Data		* Raw Image Data
	** Currently available on request until we figure out how to share images from our Drobo storage device. Down the road, we hope UNM library can help us with hosting this data.		** Currently available on request until we figure out how to share images from our Drobo storage device. Down the road, we hope UNM library can help us with hosting this data.
-	* Raw & Processed ~~tracking data~~	+	* Raw & Processed Microtubule Tracking Data
	** Data available as *.dat text files here: http://kochlab.org/files/data/MTD		** Data available as *.dat text files here: http://kochlab.org/files/data/MTD
-	** Instructions, descriptions, software available on request and we will continue working on posting them.	+	** Instructions, descriptions, software available on request and we will continue working on posting them.

	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==

Steven J. Koch at 20:53, 13 May 2010

Steven J. Koch — Thu, 13 May 2010 20:53:11 GMT

←Older revision		Revision as of 20:53, 13 May 2010
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	==KochLab Data==		==KochLab Data==
-		+	<html><p xmlns:dct="http://purl.org/dc/terms/" xmlns:vcard="http://www.w3.org/2001/vcard-rdf/3.0#">
-	===~~Shotgun DNA Mapping~~===	+	<a rel="license" href="http://creativecommons.org/publicdomain/zero/1.0/">
-	~~Coming soon!~~	+	<img src="http://i.creativecommons.org/l/zero/1.0/88x31.png" style="border-style: none;" alt="CC0" />
		+	</a>
		+	<br />
		+	To the extent possible under law, <a href="http://openwetware.org/wiki/Koch_Lab" rel="dct:publisher"><span property="dct:title">Steven J. Koch and other KochLab members</span></a>
		+	has waived all copyright and related or neighboring rights to
		+	<span property="dct:title">KochLab Data</span>.
		+	This work is published from
		+	<span about="http://openwetware.org/wiki/Koch_Lab" property="vcard:Country" datatype="dct:ISO3166" content="US">United States</span>.
		+	</p>
		+	</html>
		+	===Microtubule Gliding Assay Data===
		+	* Raw Image Data
		+	** Currently available on request until we figure out how to share images from our Drobo storage device. Down the road, we hope UNM library can help us with hosting this data.
		+	* Raw & Processed tracking data
		+	** Data available as *.dat text files here: http://kochlab.org/files/data/MTD
		+	** Instructions, descriptions, software available on request and we will continue working on posting them.

	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==

Steven J. Koch: /* Steve's grad school DNA unzipping data */

Steven J. Koch — Mon, 30 Mar 2009 03:43:48 GMT

Steve's grad school DNA unzipping data

←Older revision		Revision as of 03:43, 30 March 2009
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	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==
-	[[User:Steven J. Koch\|Steve Koch]] ~~22:27, 29 March 2009 (EDT)~~: Below are links to all of my optical tweezers data from grad school. Most of it is DNA unzipping and probing protein-DNA interactions by unzipping. The data were acquired using the [[Koch_Lab:Publications/Drafts/Versatile_Feedback\|amazing OT control software]] that Richard Yeh designed. As mentioned above, I hope to someday include all of the data analysis software necessary to look at this data. In the meantime, please contact me if you'd like to get set up for looking at the data.	+	[[User:Steven J. Koch\|Steve Koch]] says: Below are links to all of my optical tweezers data from grad school. Most of it is DNA unzipping and probing protein-DNA interactions by unzipping. The data were acquired using the [[Koch_Lab:Publications/Drafts/Versatile_Feedback\|amazing OT control software]] that Richard Yeh designed. As mentioned above, I hope to someday include all of the data analysis software necessary to look at this data. In the meantime, please contact me if you'd like to get set up for looking at the data.

	===Link to data directories===		===Link to data directories===

Steven J. Koch: /* Koch Lab Data */

Steven J. Koch — Mon, 30 Mar 2009 02:28:57 GMT

Koch Lab Data

←Older revision		Revision as of 02:28, 30 March 2009
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	As much as possible, we're going to share all of our data publicly. To make it useful, we're also going to post our data analysis code and instructions for how to analyze data. This is a work in progress, though, and so far all we can post are links to lots of data and some notes about the data. Please contact us if you want to know how to use the data!		As much as possible, we're going to share all of our data publicly. To make it useful, we're also going to post our data analysis code and instructions for how to analyze data. This is a work in progress, though, and so far all we can post are links to lots of data and some notes about the data. Please contact us if you want to know how to use the data!

-	==~~Koch Lab~~ Data==	+	==KochLab Data==

	===Shotgun DNA Mapping===		===Shotgun DNA Mapping===
-	Coming soon!	+	Coming soon!

	==Steve's grad school DNA unzipping data==		==Steve's grad school DNA unzipping data==

Steven J. Koch: /* Link to data directories */

Steven J. Koch — Mon, 30 Mar 2009 02:28:05 GMT

Link to data directories

←Older revision		Revision as of 02:28, 30 March 2009
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	===Link to data directories===		===Link to data directories===
-	http://kochlab.org/files/data/Koch_Data~~<br>~~	+	http://kochlab.org/files/data/Koch_Data
-	[http://kochlab.org/files/data/Koch_Data/Popping_VC_EcoRI/020207 Here is a particular example day]. Many of the "useful" days of data have these accompanying word files which show pictures of the converted data. Those are pretty much the only files you'll be able to look at easily. The raw data files are binary.<br>	+
-	[http://kochlab.org/files/data/Koch_Data/Popping_VC_BsoBI/020709/Converted580 Here is a link to some "converted" data]. "Converted" means the raw data have been processed using the tweezers calibration data and Richard Yeh's "geometry" algorithm. The files are also in ASCII so you should be able to easily import an ASCII file into whatever program you use for graphing. "Converted" files have not yet been processed for finding protein binding events, etc.	+

		+	[http://kochlab.org/files/data/Koch_Data/Popping_VC_EcoRI/020207 Here is a particular example day]. Many of the "useful" days of data have these accompanying word files which show pictures of the converted data. Those are pretty much the only files you'll be able to look at easily. The raw data files are binary.
		+
		+	[http://kochlab.org/files/data/Koch_Data/Popping_VC_BsoBI/020709/Converted580 Here is a link to some "converted" data]. "Converted" means the raw data have been processed using the tweezers calibration data and Richard Yeh's "geometry" algorithm. The files are also in ASCII so you should be able to easily import an ASCII file into whatever program you use for graphing. "Converted" files have not yet been processed for finding protein binding events, etc.

	===Link to data set notes===		===Link to data set notes===