Jin:Publications: Difference between revisions
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===2015=== | ===2015=== | ||
*Liao, C., Seo, S.O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y.S., Lu, T. An integrated, systems metabolic picture of the acetone-butanol-ethanol fermentation by ''Clostridium acetobutylicum''. '''Proc Natl Acad Sci U S A''' (accepted) | |||
*Kim, J.W., Seo, S.O., Zhang, G.C., Jin, Y.S., Seo, J.H. Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' | *Turner, T.L., Zhang, G.C., Kim, S.R., Subramaniam, V., Steffen, D., Skory, C.D., Jang, J.Y., Yu, B.J., Jin, Y.S. Lactic acid production from xylose by engineered ''Saccharomyces cerevisiae'' without PDC or ADH deletion. '''Applied Microbiology and Biotechnology.''' (accepted) | ||
*Kim, S.K., Jin, Y.S., Cho,I.G., Park, Y.C., Seo, J.H. Enhanced tolerance of ''Saccharomyces cerevisiae'' to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. '''Metabolic Engineering''' ( | *Tsai, C.S., Kong, I.I., Lesmana, A., Million, G., Zhang, G.C., Kim, S.R., Jin, Y.S. Rapid and marker-free Cas9/CRISPR refactoring yields equivalent xylose-utilization performance in yeast. '''Biotechnology and Bioengineering''' doi: 10.1002/bit.25632. [http://www.ncbi.nlm.nih.gov/pubmed/25943337 Link] (accepted) | ||
*Kim, S.M., Guo, J., Kwak, S., Jn, Y.S., Lee, D.K., Singh, V. Effects of genetic variation and growing condition of Prairie Cordgrass on feedstock composition and ethanol yield. '''Bioresource Technology''' ( | *Kim, S., Sung, J., Foo, M., Jin, Y.S., Kim, P.J. Uncovering the nutritional landscape of food. '''Plos One''' 10, e0118697 [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4359127/ Link] | ||
*Li, X., Vivian, Y.Y., Lin, Y., Chomvong, K., Estrela, R., Liang, J.M., Znameroski, E.A., Feehan, J., Kim, S.R., Jin, Y.S., Glass, N.L., Cate, J.H.D. Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. '''eLife''' [http://elifesciences.org/content/early/2015/02/03/eLife.05896 Link] | *Kim, J.W., Seo, S.O., Zhang, G.C., Jin, Y.S., Seo, J.H. Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' doi: 10.1016/j.biortech.2015.02.077. [http://www.ncbi.nlm.nih.gov/pubmed/25769689 Link] | ||
*Lewis, Z.T., Totten, S.M., Smilowitz, J.T., Popovic, M., Parker, E., Lemay, D.G., Van Tassell, M.L., Miller, M.J., Jin, Y.S., German, J.B., Lebrilla, C.B., Mills, D.A. Maternal Fucosyltransferase 2 Status Affects the Gut Bifidobacterial Communities of Breastfed Infants. '''Microbiome''' | *Kim, S.K., Jin, Y.S., Cho,I.G., Park, Y.C., Seo, J.H. Enhanced tolerance of ''Saccharomyces cerevisiae'' to multiple lignocellulose-derived inhibitors through modulation of spermidine contents. '''Metabolic Engineering''' 29 (2015): 46-55. [http://www.sciencedirect.com/science/article/pii/S1096717615000154 Link] | ||
*Yi, W., Zhang, X., Seo, S., Choi, K., Ting, L., Jin, Y.S., Hans, B. Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. '''Journal of Biotechnology''' ( | *Kim, S.M., Guo, J., Kwak, S., Jn, Y.S., Lee, D.K., Singh, V. Effects of genetic variation and growing condition of Prairie Cordgrass on feedstock composition and ethanol yield. '''Bioresource Technology''' 183 (2015): 70-77. [http://www.sciencedirect.com/science/article/pii/S0960852415001893 Link] | ||
*Wei, N., Oh, E.J., Million, G., Cate, J., Jin, Y.S. Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. '''ACS Synthetic Biology''' (accepted) | *Li, X., Vivian, Y.Y., Lin, Y., Chomvong, K., Estrela, R., Liang, J.M., Znameroski, E.A., Feehan, J., Kim, S.R., Jin, Y.S., Glass, N.L., Cate, J.H.D. Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels. '''eLife''' 2015 Feb 3;4. doi: 10.7554/eLife.05896.[http://elifesciences.org/content/early/2015/02/03/eLife.05896 Link] | ||
*Lewis, Z.T., Totten, S.M., Smilowitz, J.T., Popovic, M., Parker, E., Lemay, D.G., Van Tassell, M.L., Miller, M.J., Jin, Y.S., German, J.B., Lebrilla, C.B., Mills, D.A. Maternal Fucosyltransferase 2 Status Affects the Gut Bifidobacterial Communities of Breastfed Infants. '''Microbiome''' 10;3:13. doi: 10.1186/s40168-015-0071-z. eCollection 2015 [http://www.ncbi.nlm.nih.gov/pubmed/25922665 Link] | |||
*Yi, W., Zhang, X., Seo, S., Choi, K., Ting, L., Jin, Y.S., Hans, B. Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system. '''Journal of Biotechnology''' 200 (2015): 1-5. [http://www.sciencedirect.com/science/article/pii/S0168165615000486 Link] | |||
*Wei, N., Oh, E.J., Million, G., Cate, J., Jin, Y.S. Simultaneous utilization of cellobiose, xylose, and acetic acid from lignocellulosic biomass for biofuel production by an engineered yeast platform. '''ACS Synthetic Biology''' [http://www.ncbi.nlm.nih.gov/pubmed/25587748 Link] (accepted) | |||
===2014=== | ===2014=== | ||
*Kim, S.R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E.J., Zhang, G., Kim, H.K., and Jin, Y.S. Deletion of PHO13 encoding HAD type IIA phosphatase results in upregulation of the pentose phosphate pathway in yeast. '''Applied and Environmental Microbiology''' ( | *Kim, S.R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E.J., Zhang, G., Kim, H.K., and Jin, Y.S. Deletion of PHO13 encoding HAD type IIA phosphatase results in upregulation of the pentose phosphate pathway in yeast. '''Applied and Environmental Microbiology''' 81(5):1601-9. doi: 10.1128/AEM.03474-14. [http://www.ncbi.nlm.nih.gov/pubmed/25527558 Link] | ||
*Quarterman, J., Kim, S.R., Kim, P.J., Jin, Y.S. Enhanced hexose fermentation by ''Saccharomyces cerevisiae'' through integration of stoichiometric modeling and genetic screening. '''Journal of Biotechnology''' [http://www.sciencedirect.com/science/article/pii/S0168165614010141 Link] | *Quarterman, J., Kim, S.R., Kim, P.J., Jin, Y.S. Enhanced hexose fermentation by ''Saccharomyces cerevisiae'' through integration of stoichiometric modeling and genetic screening. '''Journal of Biotechnology''' [http://www.sciencedirect.com/science/article/pii/S0168165614010141 Link] | ||
*Kim, T. Y., Oh, E. J., Jin, Y. S., Oh, M. K. Improved resistance against oxidative stress of engineered cellobiose-fermenting ''Saccharomyces cerevisiae'' revealed by metabolite profiling. '''Biotechnology and Bioprocess Engineering''', 19(6), 951-957. [http://link.springer.com/article/10.1007/s12257-014-0301-4#page-1 Link] | *Kim, T. Y., Oh, E. J., Jin, Y. S., Oh, M. K. Improved resistance against oxidative stress of engineered cellobiose-fermenting ''Saccharomyces cerevisiae'' revealed by metabolite profiling. '''Biotechnology and Bioprocess Engineering''', 19(6), 951-957. [http://link.springer.com/article/10.1007/s12257-014-0301-4#page-1 Link] | ||
*Lane, S., Zhang, S., Wei, N., Rao, C., Jin, Y.S. Development and Physiological Characterization of Cellobiose-Consuming ''Yarrowia lipolytica''. '''Biotechnology & Bioengineering''' ( | *Lane, S., Zhang, S., Wei, N., Rao, C., Jin, Y.S. Development and Physiological Characterization of Cellobiose-Consuming ''Yarrowia lipolytica''. '''Biotechnology & Bioengineering''' 112(5):1012-22. doi: 10.1002/bit.25499. [http://onlinelibrary.wiley.com/doi/10.1002/bit.25499/full Link] | ||
*Zhang, G., Kong, I.I., Kim, H., Liu, J., Cate, J.H.D., Jin, Y.S. Construction of a quadruple auxotrophic mutant of an industrial polyploidy ''Saccharomyces cerevisiae'' using RNA-guided Cas9 nuclease. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/early/2014/09/29/AEM.02310-14.abstract Link] | *Zhang, G., Kong, I.I., Kim, H., Liu, J., Cate, J.H.D., Jin, Y.S. Construction of a quadruple auxotrophic mutant of an industrial polyploidy ''Saccharomyces cerevisiae'' using RNA-guided Cas9 nuclease. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/early/2014/09/29/AEM.02310-14.abstract Link] | ||
*Tsai, C.S., Kwak, S., Turner, T.L., Jin, Y.S. Yeast synthetic biology toolbox and applications for biofuel production. '''FEMS Yeast Research''' | *Tsai, C.S., Kwak, S., Turner, T.L., Jin, Y.S. Yeast synthetic biology toolbox and applications for biofuel production. '''FEMS Yeast Research''' doi: 10.1111/1567-1364.12206. [http://onlinelibrary.wiley.com/doi/10.1111/1567-1364.12206/abstract Link] | ||
*Lin, Y., Chomvong, L., Acosta-Sampson, L., Estrela, R., Galazka, J.M., Kim, S.R., Jin, Y.S., Cate, J.H.D. Leveraging transcription factors to speed cellobiose fermentation by ''Saccharomyces cerevisiae''. '''Biotechnology for Biofuels''' [http://www.biomedcentral.com/content/pdf/s13068-014-0126-6.pdf Link] | *Lin, Y., Chomvong, L., Acosta-Sampson, L., Estrela, R., Galazka, J.M., Kim, S.R., Jin, Y.S., Cate, J.H.D. Leveraging transcription factors to speed cellobiose fermentation by ''Saccharomyces cerevisiae''. '''Biotechnology for Biofuels''' [http://www.biomedcentral.com/content/pdf/s13068-014-0126-6.pdf Link] | ||
*Chomvong, K., Kordic, V., Li, X., Bauer, S., Gillespie. A.E., Ha, S.J., Oh, E.J., Galazka, J.M., Jin, Y.S., Cate, J.H. Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. '''Biotechnology for Biofuels''' [http://www.biotechnologyforbiofuels.com/content/7/1/85/abstract Link] | *Chomvong, K., Kordic, V., Li, X., Bauer, S., Gillespie. A.E., Ha, S.J., Oh, E.J., Galazka, J.M., Jin, Y.S., Cate, J.H. Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose. '''Biotechnology for Biofuels''' [http://www.biotechnologyforbiofuels.com/content/7/1/85/abstract Link] |
Revision as of 14:22, 22 May 2015
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