Jin:Publications

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==Peer-reviewed articles==
==Peer-reviewed articles==
===2013===
===2013===
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*Kim, H.J., Lee, H.R., Kim, C.S., Jin, Y.S., Seo, J.H. Investigation of protein expression profiles of erythritol-producing ''Candida magnoliae'' in response to glucose perturbation. '''Enzyme and Microbial Technology''' 53, 174-180 [http://www.sciencedirect.com/science/article/pii/S0141022913000732 Link]
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*Kim, S.J., Seo, S.O., Park, Y.C., Jin, Y.S., Seo, J.H. Production of 2,3-Butanediol from xylose by engineered ''Saccharomyces cerevisiae'' '''Journal of Biotechnology''' (in press)
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*Kim, H.J., Turner, T.L., Jin, Y.S. Combinatorial genetic perturbation to refince metabolic circuits for producing biofuels and biochemicals. Biotechnology Advances (In press)
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*Bae, Y.H., Kang, K.H., Jin, Y.S., Seo, J.H. Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' (in press)
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*Kim, S.J., Seo, S.O., Jin, Y.S. & Seo, J.H. Production of 2,3-butanediol by engineered ''Saccharomyces cerevisiae''. Bioresource Technology [http://www.sciencedirect.com/science/article/pii/S0960852413011498 Link]
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*Kim, H., Lee, W.H., Galazka, J.M., Cate, J.H., Jin, Y.S. Analysis of cellodextrin transporters from ''Neurospora crassa'' in ''Saccharomyces cerevisiae'' for cellobiose fermentation. '''Applied Microbiology and Biotechnology''' (in press)
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*Wang, Y., Li, X.Z., Milne, C., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y.S., Price, N. & Blaschek, H. Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in ''Clostridium beijerinckii''. Applied and Environmental Microbiology [http://aem.asm.org/content/early/2013/07/15/AEM.00971-13.short Link]
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*Ha, S.J., Kim, S.R., Kim, H., Du, J., Cate, J.H., Jin, Y.S. Continuous co-fermentation of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Bioresource Technology''', 149, 525-531 [http://dx.doi.org/10.1016/j.biortech.2013.09.082 Link]
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*Lee, W.H., Nan, H., Kim, H.J. & Jin, Y.S. Simultaneous saccharification and fermentation by engineered ''Saccharomyces cerevisiae'' without supplementing extracellular beta-glucosidase. Journal of Biotechnology [http://www.sciencedirect.com/science/article/pii/S0168165613002721 Link]
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*Wei, N., Quarterman, J., Kim, S.R., Cate, J.H., Jin, Y.S. Enhanced biofuel production through coupled acetic acid and xylose consumption by engineered yeast. '''Nature Communications''' 4, 2580. [http://www.nature.com/ncomms/2013/131008/ncomms3580/full/ncomms3580.html Link], [http://www.natureasia.com/en/research/highlight/8801 News Release from Natureasia], [http://news.illinois.edu/news/13/1008biofuels_Yong-SuJin.html Inside Illinois], [http://www.bbc.co.uk/news/science-environment-24489800 BBC News]
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*Kim, S.R., Park, Y.C., Jin, Y.S., & Seo, J.H. Strain engineering of ''Saccharomyces cerevisiae'' for enhanced xylose metabolism. Biotechnology Advances (accepted)
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*Li, S., Ha, S.J., Kim, H.J., Galazka, J.M., Cate, J.H., Jin, Y.S., Zhao, H. Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. '''Journal of Biotechnology''' 168, 1-6. [http://dx.doi.org/10.1016/j.jbiotec.2013.08.003 Link]
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*Wei, N., Xu, H., Kim, S.R., & Jin, Y.S. Deletion of ''FPS1'' coding for aquaglyceroporin Fps1p improves xylose fermentation by engineered ''Saccharomyces cerevisiae''. Applied and Environmental Microbiology [http://aem.asm.org/content/79/10/3193.short Link]
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*Kim, H.J., Lee, H.R., Kim, C.S., Jin, Y.S., Seo, J.H. Investigation of protein expression profiles of erythritol-producing ''Candida magnoliae'' in response to glucose perturbation. '''Enzyme and Microbial Technology''' 53, 174-180 [http://dx.doi.org/10.1016/j.enzmictec.2013.03.016 Link]
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*Kim, S.R., Kwee, N.R., Kim, H.J. & Jin, Y.S. Feasibility of xylose fermentation by engineered ''Saccharomyces cerevisiae'' overexpressing endogenous aldose reductase (''GRE3''), xylitol dehydrogenase (''XYL2'') and xylulokinase (''XYL3'') from ''Scheffersomyces stipitis''. FEMS Yeast Research [http://onlinelibrary.wiley.com/doi/10.1111/1567-1364.12036/abstract Link]
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*Kim, H.J., Turner, T.L., Jin, Y.S. Combinatorial genetic perturbation to refince metabolic circuits for producing biofuels and biochemicals. '''Biotechnology Advances''' 31, 976-985 [http://dx.doi.org/10.1016/j.biotechadv.2013.03.010 Link]
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*Lee, W.H., Kim, M.D., Jin, Y.S. & Seo, J.H. Engineering of NADPH regenerators in ''Escherichia coli'' for enhanced biotransformation. Applied Microbiology and Biotechnology [http://link.springer.com/article/10.1007/s00253-013-4750-z Link]
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*Kim, S.J., Seo, S.O., Jin, Y.S., Seo, J.H. Production of 2,3-butanediol by engineered ''Saccharomyces cerevisiae''. '''Bioresource Technology''' 146, 274-281 [http://dx.doi.org/10.1016/j.biortech.2013.07.081 Link]
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*Kim, S.R., Skerker, J.M., Kang, W., Lesmana, A., Wei, N., Arkin, A.P. & Jin, Y.S. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in ''Saccharomyces cerevisiae''. PLOS One [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0057048?utm_source=feedburner&utm_medium=feed&utm_campaign=Feed%3A+plosone%2FPLoSONE+(PLoS+ONE+Alerts%3A+New+Articles) Link]
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*Wang, Y., Li, X.Z., Milne, C., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y.S., Price, N., Blaschek, H. Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in ''Clostridium beijerinckii''. '''Applied and Environmental Microbiology''' 79, 5853-5863 [http://aem.asm.org/content/early/2013/07/15/AEM.00971-13.short Link]
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*Kim, S.R., Lee, K.S., Kong, I.K., Lesmana, A., Lee, W.H., Seo, J.H., Kweon, D.H. & Jin, Y.S. Construction of an efficient xylose-fermenting diploid ''Saccharomyces cerevisiae'' strain through mating of two engineered haploid strains capable of xylose assimilation. Journal of Biotechnology [http://www.ncbi.nlm.nih.gov/pubmed/23376240 Link]
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*Lee, W.H., Nan, H., Kim, H.J., Jin, Y.S. Simultaneous saccharification and fermentation by engineered ''Saccharomyces cerevisiae'' without supplementing extracellular beta-glucosidase. '''Journal of Biotechnology''' 167, 316-322  [http://www.sciencedirect.com/science/article/pii/S0168165613002721 Link]
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*Kim, S.R., Park, Y.C., Jin, Y.S., Seo, J.H. Strain engineering of ''Saccharomyces cerevisiae'' for enhanced xylose metabolism. '''Biotechnology Advances''' 31, 851-861 [http://dx.doi.org/10.1016/j.biotechadv.2013.03.004 Link]
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*Wei, N., Xu, H., Kim, S.R., & Jin, Y.S. Deletion of ''FPS1'' coding for aquaglyceroporin Fps1p improves xylose fermentation by engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/79/10/3193.short Link]
 +
 
 +
*Kim, S.R., Kwee, N.R., Kim, H.J. & Jin, Y.S. Feasibility of xylose fermentation by engineered ''Saccharomyces cerevisiae'' overexpressing endogenous aldose reductase (''GRE3''), xylitol dehydrogenase (''XYL2'') and xylulokinase (''XYL3'') from ''Scheffersomyces stipitis''. '''FEMS Yeast Research''' [http://onlinelibrary.wiley.com/doi/10.1111/1567-1364.12036/abstract Link]
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*Lee, W.H., Kim, M.D., Jin, Y.S. & Seo, J.H. Engineering of NADPH regenerators in ''Escherichia coli'' for enhanced biotransformation. '''Applied Microbiology and Biotechnology''' [http://link.springer.com/article/10.1007/s00253-013-4750-z Link]
 +
 
 +
*Kim, S.R., Skerker, J.M., Kang, W., Lesmana, A., Wei, N., Arkin, A.P. & Jin, Y.S. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in ''Saccharomyces cerevisiae''. '''PLOS One''' [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0057048?utm_source=feedburner&utm_medium=feed&utm_campaign=Feed%3A+plosone%2FPLoSONE+(PLoS+ONE+Alerts%3A+New+Articles) Link]
 +
 
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*Kim, S.R., Lee, K.S., Kong, I.K., Lesmana, A., Lee, W.H., Seo, J.H., Kweon, D.H. & Jin, Y.S. Construction of an efficient xylose-fermenting diploid ''Saccharomyces cerevisiae'' strain through mating of two engineered haploid strains capable of xylose assimilation. '''Journal of Biotechnology''' [http://www.ncbi.nlm.nih.gov/pubmed/23376240 Link]
===2012===
===2012===
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*Guo, B., Zhang, Y., Yu, G., Lee, W.H., Jin, Y.S.& Morgenroth, E., Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. Applied Biochemistry and Biotechnology [http://link.springer.com/article/10.1007%2Fs12010-012-0038-5 Link]
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*Guo, B., Zhang, Y., Yu, G., Lee, W.H., Jin, Y.S.& Morgenroth, E., Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. '''Applied Biochemistry and Biotechnology''' [http://link.springer.com/article/10.1007%2Fs12010-012-0038-5 Link]
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*Ha,S.J., Kim, H., Lin, Y., Jang, M.U., Galazka, J.M., Kim, T.J., Cate. J.H. & Jin, Y.S. Single amino acid substitutions of HXT2.4 from ''Scheffersomyces stipitis'' lead to improved cellobiose fermentation by engineered ''Saccharomyces cerevisiae''. Applied and Environmental Microbiology [http://aem.asm.org/content/79/5/1500.abstract Link]
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*Ha,S.J., Kim, H., Lin, Y., Jang, M.U., Galazka, J.M., Kim, T.J., Cate. J.H. & Jin, Y.S. Single amino acid substitutions of HXT2.4 from ''Scheffersomyces stipitis'' lead to improved cellobiose fermentation by engineered ''Saccharomyces cerevisiae''. '''Applied and Environmental Microbiology''' [http://aem.asm.org/content/79/5/1500.abstract Link]
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*Ha, S.J., Galazka, J.M., Oh, E.J., Kordic, V., Kim, H., Jin, Y.S., & Cate, J.H. Energetic benefits and rapid cellobiose fermentation by ''Saccharomyces cerevisiae'' expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering [http://www.sciencedirect.com/science/article/pii/S109671761200122X Link]
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*Ha, S.J., Galazka, J.M., Oh, E.J., Kordic, V., Kim, H., Jin, Y.S., & Cate, J.H. Energetic benefits and rapid cellobiose fermentation by ''Saccharomyces cerevisiae'' expressing cellobiose phosphorylase and mutant cellodextrin transporters. '''Metabolic Engineering''' [http://www.sciencedirect.com/science/article/pii/S109671761200122X Link]
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*Wei, N. Quarterman, J., & Jin, Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends in Biotechnol. [http://www.cell.com/trends/biotechnology/abstract/S0167-7799(12)00189-8 Link]
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*Wei, N. Quarterman, J., & Jin, Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. '''Trends in Biotechnol'''. [http://www.cell.com/trends/biotechnology/abstract/S0167-7799(12)00189-8 Link]
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*Oh, E.J., Ha, S.J., Kim, S.R., Lee, W.H., Galazka, J.M., Cate, J.H. & Jin, Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. Metabolic Engineering [http://www.sciencedirect.com/science/article/pii/S1096717612000985 Link]
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*Oh, E.J., Ha, S.J., Kim, S.R., Lee, W.H., Galazka, J.M., Cate, J.H. & Jin, Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' [http://www.sciencedirect.com/science/article/pii/S1096717612000985 Link]
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*Lee, K.S., Kim, J.S., Heo, P., Yang, T.J., Sung, Y.J., Cheon, Y., Koo, H.M., Yu, B.J., Seo, J.H., Jin, Y.S., Park, J.C., Kweon, D.H. Characterization of ''Saccharomyces cerevisiae'' promoters for heterologous gene expression in ''Kluyveromyces marxianus''. Appl Microbiol Biotechnol [http://www.ncbi.nlm.nih.gov/pubmed/22911091 Link]
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*Lee, K.S., Kim, J.S., Heo, P., Yang, T.J., Sung, Y.J., Cheon, Y., Koo, H.M., Yu, B.J., Seo, J.H., Jin, Y.S., Park, J.C., Kweon, D.H. Characterization of ''Saccharomyces cerevisiae'' promoters for heterologous gene expression in ''Kluyveromyces marxianus''. '''Appl Microbiol Biotechnol''' [http://www.ncbi.nlm.nih.gov/pubmed/22911091 Link]
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*Lee, W.H., Pathanibul, P., Quarterman, J., Jo, J.H., Han, N.S., Miller, M.J., Jin, Y.S.& Seo, J.H. Whole cell biosynthesis of a functional oligosaccharide, 2-fucosyllactose, using engineered ''Escherichia coli''. Microbial Cell Factories 11, 48 [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3442965/?report=abstract Link]
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*Lee, W.H., Pathanibul, P., Quarterman, J., Jo, J.H., Han, N.S., Miller, M.J., Jin, Y.S.& Seo, J.H. Whole cell biosynthesis of a functional oligosaccharide, 2-fucosyllactose, using engineered ''Escherichia coli''. '''Microbial Cell Factories''' 11, 48 [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3442965/?report=abstract Link]
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*Lee, W.H., Seo, S.O., Bae, Y.H., Nan, H., Jin, Y.S.& Seo, J.H. Isobutanol production in engineered ''Saccharomyces cerevisiae'' by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-75 [http://www.ncbi.nlm.nih.gov/pubmed/22543927 Link]
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*Lee, W.H., Seo, S.O., Bae, Y.H., Nan, H., Jin, Y.S.& Seo, J.H. Isobutanol production in engineered ''Saccharomyces cerevisiae'' by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. '''Bioprocess and Biosystems Engineering''' 35, 1467-75 [http://www.ncbi.nlm.nih.gov/pubmed/22543927 Link]
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*Kim, S.R., Ha, S.J., Kong, I.I., & Jin, Y.S. High expression of ''XYL2'' coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered ''Saccharomyces cerevisiae'' Metab. Eng. 14, 336-343 [http://www.ncbi.nlm.nih.gov/pubmed/22521925 Link]
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*Kim, S.R., Ha, S.J., Kong, I.I., & Jin, Y.S. High expression of ''XYL2'' coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered ''Saccharomyces cerevisiae'' '''Metab. Eng'''. 14, 336-343 [http://www.ncbi.nlm.nih.gov/pubmed/22521925 Link]
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*Guo, B., Zhang, Y., Ha, S. J., Jin, Y.S.& Morgenroth, E. Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technol 110,278-87 [http://dx.doi.org/10.1016/j.biortech.2012.01.133 Link]
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*Guo, B., Zhang, Y., Ha, S. J., Jin, Y.S.& Morgenroth, E. Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. '''Bioresource Technol''' 110,278-87 [http://dx.doi.org/10.1016/j.biortech.2012.01.133 Link]
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*Kim, S.R., Ha, S.J., Wei, N., Oh, E.J., & Jin, Y.S. Simultaneous co-fermenation of mixed sugars: a promising strategy for producing cellulosic ethnaol. Trend Biotechnol 30,274–282 [http://dx.doi.org/10.1016/j.tibtech.2012.01.005 Link]
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*Kim, S.R., Ha, S.J., Wei, N., Oh, E.J., & Jin, Y.S. Simultaneous co-fermenation of mixed sugars: a promising strategy for producing cellulosic ethnaol. '''Trend Biotechnol''' 30,274–282 [http://dx.doi.org/10.1016/j.tibtech.2012.01.005 Link]
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*Jin, Y.S. & Cate, J.H. Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnol. J. 7,361-73. [http://onlinelibrary.wiley.com/doi/10.1002/biot.201100489/full Link]
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*Jin, Y.S. & Cate, J.H. Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. '''Biotechnol. J'''. 7,361-73. [http://onlinelibrary.wiley.com/doi/10.1002/biot.201100489/full Link]
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*Cha, C., Kim, S.R., Jin, Y.S. & Kong, H.J. Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnol. Bioeng. 109,63-73 [http://onlinelibrary.wiley.com/doi/10.1002/bit.23258/abstract Link]
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*Cha, C., Kim, S.R., Jin, Y.S. & Kong, H.J. Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. '''Biotechnol. Bioeng'''. 109,63-73 [http://onlinelibrary.wiley.com/doi/10.1002/bit.23258/abstract Link]
===2011===
===2011===
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*Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. & Erdman, J. Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered ''Escherichia''. J Agric Food Chem  [http://pubs.acs.org/doi/abs/10.1021/jf202599z Link]
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*Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. & Erdman, J. Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered ''Escherichia''. '''J Agric Food Chem''' [http://pubs.acs.org/doi/abs/10.1021/jf202599z Link]
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*Kim, J.S., Heo P., Yang. T.J., Lee, K.S., Jin Y.S., Kim, S. K., Shin, D. & Kweon, D.H. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochem. Biophys. Res. Commun. [http://www.ncbi.nlm.nih.gov/pubmed/21872573 Link]
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*Kim, J.S., Heo P., Yang. T.J., Lee, K.S., Jin Y.S., Kim, S. K., Shin, D. & Kweon, D.H. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. '''Biochem. Biophys. Res. Commun.''' [http://www.ncbi.nlm.nih.gov/pubmed/21872573 Link]
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*Milne, C.B., Eddy, J.A., Raju, R., Ardekani,S., Kim, P.J., Senger, R. S., Jin, Y.S., Blaschek, H.P. & Price, N.D. Metabolic network reconstruction and genome-scale model of butanol-producing strain ''Clostridium beijerinckii'' NCIMB 8052 BMC Systems Biology 5:130. [http://www.biomedcentral.com/1752-0509/5/130 Link]
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*Milne, C.B., Eddy, J.A., Raju, R., Ardekani,S., Kim, P.J., Senger, R. S., Jin, Y.S., Blaschek, H.P. & Price, N.D. Metabolic network reconstruction and genome-scale model of butanol-producing strain ''Clostridium beijerinckii'' NCIMB 8052 '''BMC Systems Biology''' 5:130. [http://www.biomedcentral.com/1752-0509/5/130 Link]
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*Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J.H. & Jin, Y.S. Co-fermentation of cellobiose and galactose by an engineered ''Saccharomyces cerevisiae''. Appl. Environ. Microbiol. 77, 5822-5826. [http://aem.asm.org/cgi/content/abstract/77/16/5822 Link], [http://www.dailycal.org/2011/08/30/team-doubles-efficiency-of-converting-seaweed-into-biofuel/ Related News]
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*Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J.H. & Jin, Y.S. Co-fermentation of cellobiose and galactose by an engineered ''Saccharomyces cerevisiae''.''' Appl. Environ. Microbiol.''' 77, 5822-5826. [http://aem.asm.org/cgi/content/abstract/77/16/5822 Link], [http://www.dailycal.org/2011/08/30/team-doubles-efficiency-of-converting-seaweed-into-biofuel/ Related News]
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*Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. & Jin Y.S. Xylitol does not inhibit xylose fermentation by engineered ''Saccharomyces cerevisiae'' expressing ''xylA'' as severely as it inhibits xylose isomerase reaction ''in vitro''. Appl Microbiol Biotechnol (in press) [http://www.springerlink.com/content/q8724640851x5u25/ Link]
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*Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. & Jin Y.S. Xylitol does not inhibit xylose fermentation by engineered ''Saccharomyces cerevisiae'' expressing ''xylA'' as severely as it inhibits xylose isomerase reaction ''in vitro''. '''Appl Microbiol Biotechnol''' (in press) [http://www.springerlink.com/content/q8724640851x5u25/ Link]
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*Ha, S.J., Galazka J.M., Rin Kim S., Choi J.H., Yang X., Seo J.H., Louise Glass N., Cate J.H., & Jin Y.S.Engineered ''Saccharomyces cerevisiae'' capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci U S A. 108, 504-509 (2011) [http://www.pnas.org/content/108/2/504.abstract Link], [http://openwetware.org/images/8/80/Ha_PNAS.pdf PDF],[http://openwetware.org/images/d/d3/Ha_PNAS_SI.pdf Supporting Information], [http://www.pnas.org/content/108/2/435.full In This Issue-PNAS], [http://www.physorg.com/news/2010-12-scientists-major-obstacles-cellulosic-biofuel.html Related News]
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*Ha, S.J., Galazka J.M., Rin Kim S., Choi J.H., Yang X., Seo J.H., Louise Glass N., Cate J.H., & Jin Y.S.Engineered ''Saccharomyces cerevisiae'' capable of simultaneous cellobiose and xylose fermentation. '''Proc Natl Acad Sci U S A.''' 108, 504-509 (2011) [http://www.pnas.org/content/108/2/504.abstract Link],[http://www.pnas.org/content/108/2/435.full In This Issue-PNAS], [http://www.physorg.com/news/2010-12-scientists-major-obstacles-cellulosic-biofuel.html Related News]
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*Lee, K.S., Hong, M.E., Jung, S.C., Ha, S.J., Yu, B.J., Koo, H.M., Park, S.M., Seo, J.H., Kweon, D.H., Park, J.C. & Jin, Y.S. Improved galactose fermentation of ''Saccharomyces cerevisiae'' through inverse metabolic engineering. Biotechnol Bioeng. 108, 621-632. [http://dx.doi.org/10.1002/bit.22988 Link]
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*Lee, K.S., Hong, M.E., Jung, S.C., Ha, S.J., Yu, B.J., Koo, H.M., Park, S.M., Seo, J.H., Kweon, D.H., Park, J.C. & Jin, Y.S. Improved galactose fermentation of ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''Biotechnol Bioeng.''' 108, 621-632. [http://dx.doi.org/10.1002/bit.22988 Link]
===2010===
===2010===
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*Kim, S.R., Lee, K.S., Choi, J.H., Ha, S.J., Kweon, D.H., Seo, J.H. & Jin, Y.S. Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient ''Saccharomyces cerevisiae'' engineered for xylose metabolism. J Biotechnol 150, 404-407 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.09.962 Link]
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*Kim, S.R., Lee, K.S., Choi, J.H., Ha, S.J., Kweon, D.H., Seo, J.H. & Jin, Y.S. Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient ''Saccharomyces cerevisiae'' engineered for xylose metabolism. '''J Biotechnol''' 150, 404-407 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.09.962 Link]
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* Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. & Jin, Y.S. Restoration of growth phenotypes of ''Escherichia coli'' DH5alpha in minimal media through reversal of a point mutation in ''purB''. Appl Environ Microbiol 76, 6307-6309 (2010). [http://dx.doi.org/10.1128/AEM.01210-10 Link], [http://www.sciencedaily.com/releases/2010/11/101111160547.htm Related News1], [http://www.biotechniques.com/news/The-key-to-the-meaning-of-life-Harder-better-faster-stronger-E.-coli/biotechniques-307403.html Related News2]
+
* Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. & Jin, Y.S. Restoration of growth phenotypes of ''Escherichia coli'' DH5alpha in minimal media through reversal of a point mutation in ''purB''. '''Appl Environ Microbiol''' 76, 6307-6309 (2010). [http://dx.doi.org/10.1128/AEM.01210-10 Link], [http://www.sciencedaily.com/releases/2010/11/101111160547.htm Related News1], [http://www.biotechniques.com/news/The-key-to-the-meaning-of-life-Harder-better-faster-stronger-E.-coli/biotechniques-307403.html Related News2]
-
* Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. & Jin, Y.S. Identification of gene targets eliciting improved alcohol tolerance in ''Saccharomyces cerevisiae'' through inverse metabolic engineering. J Biotechnol 149, 52-59 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.06.006 Link], [http://www.sciencedaily.com/releases/2010/08/100819112220.htm Related News]
+
* Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. & Jin, Y.S. Identification of gene targets eliciting improved alcohol tolerance in ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''J Biotechnol''' 149, 52-59 (2010). [http://dx.doi.org/10.1016/j.jbiotec.2010.06.006 Link], [http://www.sciencedaily.com/releases/2010/08/100819112220.htm Related News]
===2009===
===2009===
-
* Tyo, K.E., Jin, Y.S., Espinoza, F.A. & Stephanopoulos, G. Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in ''Synechocystis'' PCC 6803. Biotechnol Prog 25, 1236-1243 (2009). [http://dx.doi.org/10.1002/btpr.228 Link]
+
* Tyo, K.E., Jin, Y.S., Espinoza, F.A. & Stephanopoulos, G. Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in ''Synechocystis'' PCC 6803. '''Biotechnol Prog''' 25, 1236-1243 (2009). [http://dx.doi.org/10.1002/btpr.228 Link]
-
* Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. & Kweon, D.H. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochem Biophys Res Commun 388, 217-221 (2009).
+
* Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. & Kweon, D.H. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. '''Biochem Biophys Res Commun''' 388, 217-221 (2009).
-
* Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. & Kweon, D.H. Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enz. Microb Tech 44, 217-222 (2009).
+
* Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. & Kweon, D.H. Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. '''Enz. Microb Tech''' 44, 217-222 (2009).
-
* Lee, J., Seo, E., Kweon, D.H., Park, K. & Jin, Y.S. Fermentation of rice bran and defatted rice rran for butanol production using Clostridium beijerinckii NCIMB 8052. J. Microbiol. Biotechnol. 19, 482-490 (2009).
+
* Lee, J., Seo, E., Kweon, D.H., Park, K. & Jin, Y.S. Fermentation of rice bran and defatted rice rran for butanol production using Clostridium beijerinckii NCIMB 8052. '''J. Microbiol. Biotechnol.''' 19, 482-490 (2009).
===2008===
===2008===
-
* Lee, K.S., Chang, E.H., Shin, J.Y., Kweon, D.H., Park, K.M. & Jin, Y.S. Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. Korean J Biotechnol Bioeng 23, 59-64 (2008).
+
* Lee, K.S., Chang, E.H., Shin, J.Y., Kweon, D.H., Park, K.M. & Jin, Y.S. Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. '''Korean J Biotechnol Bioeng''' 23, 59-64 (2008).
-
* Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. & Kweon, D.H. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS J 275, 3051-3063 (2008).
+
* Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. & Kweon, D.H. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. '''FEBS J''' 275, 3051-3063 (2008).
 +
 
===2006-2007===
===2006-2007===
-
*Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. Food Eng Prog 11, 293-297 (2007)
+
*Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. '''Food Eng Prog''' 11, 293-297 (2007)
-
* Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metab Eng 9, 337-347 (2007).
+
* Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. '''Metab Eng''' 9, 337-347 (2007).
-
* Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25, 319-326 (2007).
+
* Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. '''Nat Biotechnol''' 25, 319-326 (2007).
-
* Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enz Microb Tech 38, 741-747 (2006).
+
* Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. '''Enz Microb Tech''' 38, 741-747 (2006).
-
* Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. Appl Microbiol Biotechnol 68, 42-45 (2005).
+
* Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. '''Appl Microbiol Biotechnol''' 68, 42-45 (2005).
-
* Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Appl Environ Microbiol 71, 8249-8256 (2005).
+
* Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. '''Appl Environ Microbiol''' 71, 8249-8256 (2005).
-
* Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab Eng 7, 155-164 (2005).
+
* Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. '''Metab Eng''' 7, 155-164 (2005).
-
* Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Appl Environ Microbiol 70, 6816-6825 (2004).
+
* Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. '''Appl Environ Microbiol''' 70, 6816-6825 (2004).
-
* Jin, Y.S. & Jeffries, T.W. Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metab Eng 6, 229-238 (2004).
+
* Jin, Y.S. & Jeffries, T.W. Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. '''Metab Eng''' 6, 229-238 (2004).
-
* Jeffries, T.W. & Jin, Y.S. Metabolic engineering for improved fermentation of pentoses by yeasts. Appl Microbiol Biotechnol 63, 495-509 (2004).
+
* Jeffries, T.W. & Jin, Y.S. Metabolic engineering for improved fermentation of pentoses by yeasts. '''Appl Microbiol Biotechnol''' 63, 495-509 (2004).
-
* Jin, Y.S., Ni, H., Laplaza, J.M. & Jeffries, T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Appl Environ Microbiol 69, 495-503 (2003).
+
* Jin, Y.S., Ni, H., Laplaza, J.M. & Jeffries, T.W. Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. '''Appl Environ Microbiol''' 69, 495-503 (2003).
-
* Jin, Y.S. & Jeffries, T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Appl Biochem Biotechnol 105 -108, 277-286 (2003).
+
* Jin, Y.S. & Jeffries, T.W. Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. '''Appl Biochem Biotechnol''' 105 -108, 277-286 (2003).
-
* Jin, Y.S., Jones, S., Shi, N.Q. & Jeffries, T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Appl Environ Microbiol 68, 1232-1239 (2002).
+
* Jin, Y.S., Jones, S., Shi, N.Q. & Jeffries, T.W. Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. '''Appl Environ Microbiol''' 68, 1232-1239 (2002).
-
* Jin, Y.S., Lee, T.H., Choi, Y.D., Ryu, Y.W. & Seo, J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. J Microbiol Biotechnol 10, 564-567 (2000).
+
* Jin, Y.S., Lee, T.H., Choi, Y.D., Ryu, Y.W. & Seo, J.H. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae containing genes for xylose reductase and xylitol dehydrogenase from Pichia stipitis. '''J Microbiol Biotechnol''' 10, 564-567 (2000).
-
* Jeffries, T.W. & Jin, Y.S. Ethanol and thermotolerance in the bioconversion of xylose by yeasts. Adv Appl Microbiol 47, 221-268 (2000).
+
* Jeffries, T.W. & Jin, Y.S. Ethanol and thermotolerance in the bioconversion of xylose by yeasts. '''Adv Appl Microbiol''' 47, 221-268 (2000).

Revision as of 17:32, 11 December 2013

Molecular and Systems Biotechnology Lab @ UIUC

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Contents

Peer-reviewed articles

2013

  • Kim, S.J., Seo, S.O., Park, Y.C., Jin, Y.S., Seo, J.H. Production of 2,3-Butanediol from xylose by engineered Saccharomyces cerevisiae Journal of Biotechnology (in press)
  • Bae, Y.H., Kang, K.H., Jin, Y.S., Seo, J.H. Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae. Journal of Biotechnology (in press)
  • Kim, H., Lee, W.H., Galazka, J.M., Cate, J.H., Jin, Y.S. Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation. Applied Microbiology and Biotechnology (in press)
  • Ha, S.J., Kim, S.R., Kim, H., Du, J., Cate, J.H., Jin, Y.S. Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae. Bioresource Technology, 149, 525-531 Link
  • Li, S., Ha, S.J., Kim, H.J., Galazka, J.M., Cate, J.H., Jin, Y.S., Zhao, H. Investigation of the functional role of aldose 1-epimerase in engineered cellobiose utilization. Journal of Biotechnology 168, 1-6. Link
  • Kim, H.J., Lee, H.R., Kim, C.S., Jin, Y.S., Seo, J.H. Investigation of protein expression profiles of erythritol-producing Candida magnoliae in response to glucose perturbation. Enzyme and Microbial Technology 53, 174-180 Link
  • Kim, H.J., Turner, T.L., Jin, Y.S. Combinatorial genetic perturbation to refince metabolic circuits for producing biofuels and biochemicals. Biotechnology Advances 31, 976-985 Link
  • Kim, S.J., Seo, S.O., Jin, Y.S., Seo, J.H. Production of 2,3-butanediol by engineered Saccharomyces cerevisiae. Bioresource Technology 146, 274-281 Link
  • Wang, Y., Li, X.Z., Milne, C., Janssen, H., Lin, W., Phan, G., Hu, H., Jin, Y.S., Price, N., Blaschek, H. Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii. Applied and Environmental Microbiology 79, 5853-5863 Link
  • Lee, W.H., Nan, H., Kim, H.J., Jin, Y.S. Simultaneous saccharification and fermentation by engineered Saccharomyces cerevisiae without supplementing extracellular beta-glucosidase. Journal of Biotechnology 167, 316-322 Link
  • Kim, S.R., Park, Y.C., Jin, Y.S., Seo, J.H. Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnology Advances 31, 851-861 Link
  • Wei, N., Xu, H., Kim, S.R., & Jin, Y.S. Deletion of FPS1 coding for aquaglyceroporin Fps1p improves xylose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology Link
  • Kim, S.R., Kwee, N.R., Kim, H.J. & Jin, Y.S. Feasibility of xylose fermentation by engineered Saccharomyces cerevisiae overexpressing endogenous aldose reductase (GRE3), xylitol dehydrogenase (XYL2) and xylulokinase (XYL3) from Scheffersomyces stipitis. FEMS Yeast Research Link
  • Lee, W.H., Kim, M.D., Jin, Y.S. & Seo, J.H. Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation. Applied Microbiology and Biotechnology Link
  • Kim, S.R., Skerker, J.M., Kang, W., Lesmana, A., Wei, N., Arkin, A.P. & Jin, Y.S. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLOS One Link
  • Kim, S.R., Lee, K.S., Kong, I.K., Lesmana, A., Lee, W.H., Seo, J.H., Kweon, D.H. & Jin, Y.S. Construction of an efficient xylose-fermenting diploid Saccharomyces cerevisiae strain through mating of two engineered haploid strains capable of xylose assimilation. Journal of Biotechnology Link

2012

  • Guo, B., Zhang, Y., Yu, G., Lee, W.H., Jin, Y.S.& Morgenroth, E., Two-stage acidic-alkaline hydrothermal pretreatment of lignocellulose for the high recovery of cellulose and hemicellulose sugars. Applied Biochemistry and Biotechnology Link
  • Ha,S.J., Kim, H., Lin, Y., Jang, M.U., Galazka, J.M., Kim, T.J., Cate. J.H. & Jin, Y.S. Single amino acid substitutions of HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology Link
  • Ha, S.J., Galazka, J.M., Oh, E.J., Kordic, V., Kim, H., Jin, Y.S., & Cate, J.H. Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters. Metabolic Engineering Link
  • Wei, N. Quarterman, J., & Jin, Y.S. Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends in Biotechnol. Link
  • Oh, E.J., Ha, S.J., Kim, S.R., Lee, W.H., Galazka, J.M., Cate, J.H. & Jin, Y.S. Enhanced xylitol production through simultaneous co-utilization of cellobiose and xylose by engineered Saccharomyces cerevisiae. Metabolic Engineering Link
  • Lee, K.S., Kim, J.S., Heo, P., Yang, T.J., Sung, Y.J., Cheon, Y., Koo, H.M., Yu, B.J., Seo, J.H., Jin, Y.S., Park, J.C., Kweon, D.H. Characterization of Saccharomyces cerevisiae promoters for heterologous gene expression in Kluyveromyces marxianus. Appl Microbiol Biotechnol Link
  • Lee, W.H., Pathanibul, P., Quarterman, J., Jo, J.H., Han, N.S., Miller, M.J., Jin, Y.S.& Seo, J.H. Whole cell biosynthesis of a functional oligosaccharide, 2-fucosyllactose, using engineered Escherichia coli. Microbial Cell Factories 11, 48 Link
  • Lee, W.H., Seo, S.O., Bae, Y.H., Nan, H., Jin, Y.S.& Seo, J.H. Isobutanol production in engineered Saccharomyces cerevisiae by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-75 Link
  • Kim, S.R., Ha, S.J., Kong, I.I., & Jin, Y.S. High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae Metab. Eng. 14, 336-343 Link
  • Guo, B., Zhang, Y., Ha, S. J., Jin, Y.S.& Morgenroth, E. Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technol 110,278-87 Link
  • Kim, S.R., Ha, S.J., Wei, N., Oh, E.J., & Jin, Y.S. Simultaneous co-fermenation of mixed sugars: a promising strategy for producing cellulosic ethnaol. Trend Biotechnol 30,274–282 Link
  • Jin, Y.S. & Cate, J.H. Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnol. J. 7,361-73. Link
  • Cha, C., Kim, S.R., Jin, Y.S. & Kong, H.J. Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnol. Bioeng. 109,63-73 Link

2011

  • Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. & Erdman, J. Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered Escherichia. J Agric Food Chem Link
  • Kim, J.S., Heo P., Yang. T.J., Lee, K.S., Jin Y.S., Kim, S. K., Shin, D. & Kweon, D.H. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochem. Biophys. Res. Commun. Link
  • Milne, C.B., Eddy, J.A., Raju, R., Ardekani,S., Kim, P.J., Senger, R. S., Jin, Y.S., Blaschek, H.P. & Price, N.D. Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052 BMC Systems Biology 5:130. Link
  • Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J.H. & Jin, Y.S. Co-fermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae. Appl. Environ. Microbiol. 77, 5822-5826. Link, Related News
  • Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. & Jin Y.S. Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction in vitro. Appl Microbiol Biotechnol (in press) Link
  • Ha, S.J., Galazka J.M., Rin Kim S., Choi J.H., Yang X., Seo J.H., Louise Glass N., Cate J.H., & Jin Y.S.Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci U S A. 108, 504-509 (2011) Link,In This Issue-PNAS, Related News
  • Lee, K.S., Hong, M.E., Jung, S.C., Ha, S.J., Yu, B.J., Koo, H.M., Park, S.M., Seo, J.H., Kweon, D.H., Park, J.C. & Jin, Y.S. Improved galactose fermentation of Saccharomyces cerevisiae through inverse metabolic engineering. Biotechnol Bioeng. 108, 621-632. Link

2010

  • Kim, S.R., Lee, K.S., Choi, J.H., Ha, S.J., Kweon, D.H., Seo, J.H. & Jin, Y.S. Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient Saccharomyces cerevisiae engineered for xylose metabolism. J Biotechnol 150, 404-407 (2010). Link
  • Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. & Jin, Y.S. Restoration of growth phenotypes of Escherichia coli DH5alpha in minimal media through reversal of a point mutation in purB. Appl Environ Microbiol 76, 6307-6309 (2010). Link, Related News1, Related News2
  • Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. & Jin, Y.S. Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering. J Biotechnol 149, 52-59 (2010). Link, Related News

2009

  • Tyo, K.E., Jin, Y.S., Espinoza, F.A. & Stephanopoulos, G. Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in Synechocystis PCC 6803. Biotechnol Prog 25, 1236-1243 (2009). Link
  • Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. & Kweon, D.H. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochem Biophys Res Commun 388, 217-221 (2009).
  • Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. & Kweon, D.H. Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. Enz. Microb Tech 44, 217-222 (2009).
  • Lee, J., Seo, E., Kweon, D.H., Park, K. & Jin, Y.S. Fermentation of rice bran and defatted rice rran for butanol production using Clostridium beijerinckii NCIMB 8052. J. Microbiol. Biotechnol. 19, 482-490 (2009).

2008

  • Lee, K.S., Chang, E.H., Shin, J.Y., Kweon, D.H., Park, K.M. & Jin, Y.S. Production of casein phosphopeptides using Streptococcus faecalis var. liquefaciens cell immobilization. Korean J Biotechnol Bioeng 23, 59-64 (2008).
  • Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. & Kweon, D.H. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS J 275, 3051-3063 (2008).

2006-2007

  • Jung, S.C., Chung, C.Y., Kim, J.S., Kweon, D.H., Park, K.M. & Jin, Y.S. Policosanol production from rice bran oil byproducts. Food Eng Prog 11, 293-297 (2007)
  • Jin, Y.S. & Stephanopoulos, G. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metab Eng 9, 337-347 (2007).
  • Jeffries, T.W., Grigoriev, I.V., Grimwood, J., Laplaza, J.M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y.S., Passoth, V. & Richardson, P.M. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25, 319-326 (2007).
  • Laplaza, J.M., Torres, B.R., Jin, Y.S. & Jeffries, T.W. Sh ble and Cre adapted for functional genomics and metabolic engineering of Pichia stipitis. Enz Microb Tech 38, 741-747 (2006).
  • Jin, Y.S., Cruz, J. & Jeffries, T.W. Xylitol production by a Pichia stipitis D-xylulokinase mutant. Appl Microbiol Biotechnol 68, 42-45 (2005).
  • Jin, Y.S., Alper, H., Yang, Y.T. & Stephanopoulos, G. Improvement of xylose uptake and ethanol production in recombinant Saccharomyces cerevisiae through an inverse metabolic engineering approach. Appl Environ Microbiol 71, 8249-8256 (2005).
  • Alper, H., Jin, Y.S., Moxley, J.F. & Stephanopoulos, G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab Eng 7, 155-164 (2005).
  • Jin, Y.S., Laplaza, J.M. & Jeffries, T.W. Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Appl Environ Microbiol 70, 6816-6825 (2004).
  • Jin, Y.S. & Jeffries, T.W. Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metab Eng 6, 229-238 (2004).
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