Jin:Publications: Difference between revisions
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== | ===2017=== | ||
*Lee, Y. G., Jin, Y. S., Cha, Y. L. & Seo, J. H. (2017). Bioethanol production from cellulosic hydrolysates by engineered industrial ''Saccharomyces cerevisiae''. '''Bioresource Technology''', 228, 355-361. | |||
*Kwak, S., & Jin, Y. S. (2017). Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: a review and perspective. '''Microbial cell factories''', 16(1), 82. | |||
*Kim, S. R., Skerker, J. M., Kong, I. I., Kim, H., Maurer, M. J., Zhang, G. C., ... & Jin, Y. S. (2017). Metabolic engineering of a haploid strain derived from a triploid industrial yeast for producing cellulosic ethanol. '''Metabolic Engineering''', 40, 176-185. | |||
*Lee, W. H., & Jin, Y. S. (2017). Improved ethanol production by engineered Saccharomyces cerevisiae expressing a mutated cellobiose transporter during simultaneous saccharification and fermentation. '''Journal of Biotechnology''', 245, 1-8. | |||
*Turner, T. L., Kim, E., Hwang, C., Zhang, G. C., Liu, J. J., & Jin, Y. S. (2017). Short communication: Conversion of lactose and whey into lactic acid by engineered yeast. '''Journal of Dairy Science''', 100(1), 124-128. | |||
*Zhang, G. C., Turner, T. L., & Jin, Y. S. (2017). Enhanced xylose fermentation by engineered yeast expressing NADH oxidase through high cell density inoculums. '''Journal of Industrial Microbiology & Biotechnology''', 1-9. | |||
*Seo, S. O., Wang, Y., Lu, T., Jin, Y. S., & Blaschek, H. P. (2017). Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production. '''Biotechnology and Bioengineering''', 114(1), 106-112. | |||
===2016=== | ===2016=== | ||
* | *Zhang, G. C., Kong, I. I., Wei, N., Peng, D., Turner, T. L., Sung, B. H., ... & Jin, Y. S. (2016). Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast. '''Biotechnology and Bioengineering''', 113(12), 2587-2596. | ||
*Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., ... & Jin, Y. S. (2016). Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae. '''ACS Synthetic Biology'''. | |||
*Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, I. I., ... & Jin, Y. S. (2016). GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae. '''Biotechnology and Bioengineering''', 113(10), 2149-2155. | |||
* | *Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C., & Jin, Y. S. (2016). Engineering and Evolution of Saccharomyces cerevisiae to Produce Biofuels and Chemicals. (Book Chapter) | ||
* | *Kim, J. W., Kim, J., Seo, S. O., Kim, K. H., Jin, Y. S., & Seo, J. H. (2016). Enhanced production of 2, 3-butanediol by engineered Saccharomyces cerevisiae through fine-tuning of pyruvate decarboxylase and NADH oxidase activities. '''Biotechnology for Biofuels''', 9(1), 265. | ||
* | *Park, J., Wang, Z., Lee, W.-H., Jameel, H., Jin, Y.-S., and Park, S. (2016) Effect of the two-stage autohydrolysis of hardwood on the enzymatic saccharification and subsequent fermentation with an efficient xylose-utilizing ''Saccharomyces cerevisiae''. '''BioResources''' 11, 9584-9595 | ||
* | *Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., ... & Seo, J. H. (2016). Enhanced production of 2, 3‐butanediol in pyruvate decarboxylase‐deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose. '''Biotechnology Journal''', 11(11), 1424-1432. | ||
* | *Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L., and Jin, Y. S. (2016) Lactose fermentation by engineered ''Saccharomyces cerevisiae'' capable of fermenting cellobiose. '''Journal of Biotechnology''' 234, 99-104 | ||
* | *Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S., & Blaschek, H. P. (2016). Gene transcription repression in Clostridium beijerinckii using CRISPR‐dCas9. '''Biotechnology and Bioengineering''', 113(12), 2739-2743. | ||
*Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., and Jin, Y. S. (2016) Rapid and efficient galactose fermentation by engineered ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' 229, 13-21 | *Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., and Jin, Y. S. (2016) Rapid and efficient galactose fermentation by engineered ''Saccharomyces cerevisiae''. '''Journal of Biotechnology''' 229, 13-21 | ||
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===2012=== | ===2012=== | ||
*Lee, W. H., Seo, S. O., Bae, Y. H., Nan, H., Jin, Y. S., and Seo, J. H. (2012) Isobutanol production in engineered Saccharomyces cerevisiae by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. Bioprocess and Biosystems Engineering 35, 1467-1475 | *Lee, W. H., Seo, S. O., Bae, Y. H., Nan, H., Jin, Y. S., and Seo, J. H. (2012) Isobutanol production in engineered ''Saccharomyces cerevisiae'' by overexpression of 2-ketoisovalerate decarboxylase and valine biosynthetic enzymes. '''Bioprocess and Biosystems Engineering''' 35, 1467-1475 | ||
*Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S., and Seo, J. H. (2012) Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered Escherichia coli. Microbial Cell Factories 11, 48 | *Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S., and Seo, J. H. (2012) Whole cell biosynthesis of a functional oligosaccharide, 2'-fucosyllactose, using engineered ''Escherichia coli''. '''Microbial Cell Factories''' 11, 48 | ||
*Kim, S. R., Ha, S. J., Wei, N., Oh, E. J., and Jin, Y. S. (2012) Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. Trends in Biotechnology 30, 274-282 | *Kim, S. R., Ha, S. J., Wei, N., Oh, E. J., and Jin, Y. S. (2012) Simultaneous co-fermentation of mixed sugars: A promising strategy for producing cellulosic ethanol. '''Trends in Biotechnology''' 30, 274-282 | ||
*Kim, S. R., Ha, S. J., Kong, I. I., and Jin, Y. S. (2012) High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae. Metabolic Engineering 14, 336-343 | *Kim, S. R., Ha, S. J., Kong, I. I., and Jin, Y. S. (2012) High expression of ''XYL2'' coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 14, 336-343 | ||
*Jin, Y. S., and Cate, J. H. D. (2012) Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. Biotechnology Journal 7, 328-329 | *Jin, Y. S., and Cate, J. H. D. (2012) Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars. '''Biotechnology Journal''' 7, 328-329 | ||
*Guo, B., Zhang, Y., Ha, S. J., Jin, Y. S., and Morgenroth, E. (2012) Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. Bioresource Technology 110, 278-287 | *Guo, B., Zhang, Y., Ha, S. J., Jin, Y. S., and Morgenroth, E. (2012) Combined biomimetic and inorganic acids hydrolysis of hemicellulose in Miscanthus for bioethanol production. '''Bioresource Technology''' 110, 278-287 | ||
*Cha, C., Kim, S. R., Jin, Y. S., and Kong, H. (2012) Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. Biotechnology and Bioengineering 109, 63-73 | *Cha, C., Kim, S. R., Jin, Y. S., and Kong, H. (2012) Tuning structural durability of yeast-encapsulating alginate gel beads with interpenetrating networks for sustained bioethanol production. '''Biotechnology and Bioengineering''' 109, 63-73 | ||
*Milne, C. B., Eddy, J. A., Raju, R., Ardekani, S., Kim, P. J., Senger, R. S., Jin, Y. S., Blaschek, H. P., and Price, N. D. (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Systems Biology 5 | *Milne, C. B., Eddy, J. A., Raju, R., Ardekani, S., Kim, P. J., Senger, R. S., Jin, Y. S., Blaschek, H. P., and Price, N. D. (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain ''Clostridium beijerinckii'' NCIMB 8052. '''BMC Systems Biology''' 5 | ||
===2011=== | ===2011=== | ||
*Lu, C.H., Choi, J.H., Engelmann Moran, N., Jin, Y.S. | *Lu, C. H., Choi, J. H., Engelmann Moran, N., Jin, Y. S., and Erdman, J. W. (2011) Laboratory-scale production of 13C-labeled lycopene and phytoene by bioengineered ''Escherichia coli''. '''Journal of Agricultural and Food Chemistry''' 59, 9996-10005 | ||
* | *Lee, K. S., Hong, M. E., Jung, S. C., Ha, S. J., Yu, B. J., Koo, H. M., Park, S. M., Seo, J. H., Kweon, D. H., Park, J. C., and Jin, Y. S. (2011) Improved galactose fermentation of ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''Biotechnology and Bioengineering''' 108, 621-631 | ||
* | *Kim, J. S., Heo, P., Yang, T. J., Lee, K. S., Jin, Y. S., Kim, S. K., Shin, D., and Kweon, D. H. (2011) Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. '''Biochemical and Biophysical Research Communications''' 413, 105-110 | ||
*Ha, S.J., Wei, Q., Kim, S.R., Galazka, J., Cate, J. | *Ha, S. J., Wei, Q., Kim, S. R., Galazka, J. M., Cate, J., and Jin, Y. S. (2011) Cofermentation of cellobiose and galactose by an engineered ''Saccharomyces cerevisiae'' Strain. '''Applied and Environmental Microbiology''' 77, 5822-5825 [http://aem.asm.org/cgi/content/abstract/77/16/5822 Link], [http://www.dailycal.org/2011/08/30/team-doubles-efficiency-of-converting-seaweed-into-biofuel/ Related News] | ||
*Ha, S.J., Kim, S.R., Choi J.H., Park, M.S. | *Ha, S. J., Kim, S. R., Choi, J. H., Park, M. S., and Jin, Y. S. (2011) Xylitol does not inhibit xylose fermentation by engineered Saccharomyces cerevisiae expressing xylA as severely as it inhibits xylose isomerase reaction ''in vitro''. '''Applied Microbiology and Biotechnology''' 92, 77-84 | ||
*Ha, S.J., Galazka J.M., | *Ha, S. J., Galazka, J. M., Kim, S. R., Choi, J. H., Yang, X., Seo, J. H., Glass, N. L., Cate, J. H. D., and Jin, Y. S. (2011) Engineered ''Saccharomyces cerevisiae'' capable of simultaneous cellobiose and xylose fermentation. '''Proceedings of the National Academy of Sciences of the United States of America''' 108, 516-521 [http://www.pnas.org/content/108/2/504.abstract Link],[http://www.pnas.org/content/108/2/435.full In This Issue-PNAS], [http://www.physorg.com/news/2010-12-scientists-major-obstacles-cellulosic-biofuel.html Related News] | ||
* | ===2010=== | ||
*Kim, S. R., Lee, K. S., Choi, J. H., Ha, S. J., Kweon, D. H., Seo, J. H., and Jin, Y. S. (2010) Repeated-batch fermentations of xylose and glucose-xylose mixtures using a respiration-deficient ''Saccharomyces cerevisiae'' engineered for xylose metabolism. '''Journal of Biotechnology''' 150, 404-407 | |||
*Jung, S. C., Smith, C. L., Lee, K. S., Hong, M. E., Kweon, D. H., Stephanopoulos, G., and Jin, Y. S. (2010) Restoration of growth phenotypes of ''Escherichia coli'' DH5α in minimal media through reversal of a point mutation in ''purB''. '''Applied and Environmental Microbiology''' 76, 6307-6309 [http://www.sciencedaily.com/releases/2010/11/101111160547.htm Related News1], [http://www.biotechniques.com/news/The-key-to-the-meaning-of-life-Harder-better-faster-stronger-E.-coli/biotechniques-307403.html Related News2] | |||
* Jung, S.C., Smith, C.L., Lee, K.S., Hong, M.E., Kweon, D.H., Stephanopoulos, G. | *Hong, M. E., Lee, K. S., Yu, B. J., Sung, Y. J., Park, S. M., Koo, H. M., Kweon, D. H., Park, J. C., and Jin, Y. S. (2010) Identification of gene targets eliciting improved alcohol tolerance in ''Saccharomyces cerevisiae'' through inverse metabolic engineering. '''Journal of Biotechnology''' 149, 52-59 [http://www.sciencedaily.com/releases/2010/08/100819112220.htm Related News] | ||
* Hong, M.E., Lee, K.S., Yu, B.J., Sung, Y.J., Park, S.M., Koo, H.M., Kweon, D.H., Park, J.C. | |||
===2009=== | ===2009=== | ||
* Tyo, K.E. | *Tyo, K. E. J., Espinoza, F. A., Stephanopoulos, G., and Jin, Y. S. (2009) Identification of gene disruptions for increased poly-3-hydroxybutyrate accumulation in ''Synechocystis'' PCC 6803. '''Biotechnology Progress''' 25, 1236-1243 | ||
* Shin, J.Y., Shin, J.I., Kim, J.S., Yang, Y.S., Hwang, Y., Yang, J.S., Shin, D., Seo, J.H., Jin, Y.S., Park, Y.C., Hwang, J.S. | |||
* Lee, K., Shin, J.Y., Yang, Y.S., Shin, J.I., Park, Y.C., Seo, J.H., Park, T.H., Shin, C.S., Jin, Y.S. | *Shin, J. Y., Shin, J. I., Kim, J. S., Yang, Y. S., Hwang, Y., Yang, J. S., Shin, D., Seo, J. H., Jin, Y. S., Park, Y. C., Hwang, J. S., and Kweon, D. H. (2009) Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. '''Biochemical and Biophysical Research Communications''' 388, 217-221 | ||
* Lee, J., Seo, E., Kweon, D.H., Park, K. | |||
*Lee, K., Shin, J. Y., Yang, Y. S., Shin, J. I., Park, Y. C., Seo, J. H., Park, T. H., Shin, C. S., Jin, Y. S., and Kweon, D. H. (2009) Towards a microarray of functional membrane proteins: Assembly of a surface-attachable, membrane-protein-anchored membrane structure using apolipoprotein A-1. '''Enzyme and Microbial Technology''' 44, 217-222 | |||
*Lee, J., Seo, E., Kweon, D. H., Park, K., and Jin, Y. S. (2009) Fermentation of rice bran and defatted rice bran for butanol production using ''Clostridium beijerinckii'' NCIMB 8052. '''Journal of Microbiology and Biotechnology''' 19, 482-490 | |||
===2008=== | ===2008=== | ||
* Lee, K.S., | *Lee, K. S., Shin, J. Y., Jang, Y. H., Kweon, D. H., Park, K. M., and Jin, Y. S. (2008) Production of casein phosphopeptides using ''Streptococcus faecalis var. liquefaciens'' cell immobilization. '''KSBB Journal''' 23, 59-64 | ||
* Jung, C.H., Yang, Y.S., Kim, J.S., Shin, J.I., Jin, Y.S., Shin, J.Y., Lee, J.H., Chung, K.M., Hwang, J.S., Oh, J.M., Shin, Y.K. | |||
*Jung, C. H., Yang, Y. S., Kim, J. S., Shin, J. I., Jin, Y. S., Shin, J. Y., Lee, J. H., Chung, K. M., Hwang, J. S., Oh, J. M., Shin, Y. K., and Kweon, D. H. (2008) A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. '''FEBS Journal''' 275, 3051-3063 | |||
===2007 and before=== | |||
*Jung, S. C., Chung, C. Y., Kim, J. S., Kweon, D. H., Park, K. M., and Jin, Y. S. (2007) Policosanol production from rice bran oil byproducts. '''Food Engineering Progress''' 11, 337-347 | |||
*Jin, Y. S., and Stephanopoulos, G. (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in ''Escherichia coli''. '''Metabolic Engineering''' 9, 337-347 | |||
*Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P., Shapiro, H., Jin, Y. S., Passoth, V., and Richardson, P. M. (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast ''Pichia stipitis''. '''Nature Biotechnology''' 25, 319-326 | |||
*Laplaza, J. M., Torres, B. R., Jin, Y. S., and Jeffries, T. W. (2006) Sh ble and Cre adapted for functional genomics and metabolic engineering of ''Pichia stipitis''. '''Enzyme and Microbial Technology''' 38, 741-747 | |||
*Kim, J. S., Lee, K. W., Jin, Y. S., Yoo, S. J., Jung, K. Y., Lee, J. W., Lee, S. Y., and Hwang, D. H. (2006) Standardization on metabolic and biological pathway. '''Bioinformatics and Biosystems''' 1, 196-200 | |||
*Jin, Y. S., Cruz, J., and Jeffries, T. W. (2005) Xylitol production by a ''Pichia stipitis'' D-xylulokinase mutant. '''Applied Microbiology and Biotechnology''' 68, 42-45 | |||
*Jin, Y. S., Alper, H., Yang, Y. T., and Stephanopoulos, G. (2005) Improvement of xylose uptake and ethanol production in recombinant ''Saccharomyces cerevisiae'' through an inverse metabolic engineering approach. ''Applied and Environmental Microbiology'' 71, 8249-8256 | |||
*Alper, H., Jin, Y. S., Moxley, J. F., and Stephanopoulos, G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in ''Escherichia coli''. '''Metabolic Engineering''' 7, 155-164 | |||
*Jin, Y. S., Laplaza, J. M., and Jeffries, T. W. (2004) ''Saccharomyces cerevisiae'' engineered for xylose metabolism exhibits a respiratory response. '''Applied and Environmental Microbiology''' 70, 6816-6825 | |||
*Jin, Y. S., and Jeffries, T. W. (2004) Stoichiometric network constraints on xylose metabolism by recombinant ''Saccharomyces cerevisiae''. '''Metabolic Engineering''' 6, 229-238 | |||
*Jeffries, T. W., and Jin, Y. S. (2004) Metabolic engineering for improved fermentation of pentoses by yeasts. '''Applied Microbiology and Biotechnology''' 63, 495-509 | |||
*Jin, Y. S., Ni, H., Laplaza, J. M., and Jeffries, T. W. (2003) Optimal growth and ethanol production from xylose by recombinant ''Saccharomyces cerevisiae'' require moderate D-xylulokinase activity. '''Applied and Environmental Microbiology''' 69, 495-503 | |||
*Jin, Y. S., and Jeffries, T. W. (2003) Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant ''Saccharomyces cerevisiae''. '''Applied Biochemistry and Biotechnology''' 106, 277-286 | |||
*Jin, Y. S., Jones, S., Shi, N. Q., and Jeffries, T. W. (2002) Molecular cloning of ''XYL3'' (D-xylulokinase) from ''Pichia stipitis'' and characterization of its physiological function. '''Applied and Environmental Microbiology''' 68, 1232-1239 | |||
*Jin, Y. S., Lee, T. H., Choi, Y. D., Ryu, Y. W., and Seo, J. H. (2000) Conversion of xylose to ethanol by recombinant ''Saccharomyces cerevisiae'' containing genes for xylose reductase and xylitol dehydrogenase from ''Pichia stipitis''. '''Journal of Microbiology and Biotechnology''' 10, 564-567 | |||
*Jeffries, T. W., and Jin, Y. S. (2000) Ethanol and thermotolerance in the bioconversion of xylose by yeasts. '''Advances in Applied Microbiology''' 47, 221-268 | |||
* Jeffries, T.W., | |||
Latest revision as of 10:45, 9 September 2017
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