James P. McDonald Week 6 - Revision history

James P. McDonald: changed link names

2013-02-22T02:08:57Z

changed link names

←Older revision		Revision as of 02:08, 22 February 2013
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	#*We chose project 2: The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.		#*We chose project 2: The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.
	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.		#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
-	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html ~~Biological~~ Paper]]	+	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Paper 1 Link]]
	#*This paper will be useful because the experiment done in the paper deals with a chemostat containing a yeast population. There is a detailed section of the paper dedicated to the oxygen consumption and carbon dioxide production in the yeast. The information and data presented will be helpful in formulating a model for oxygen consumption and carbon dioxide in our project.		#*This paper will be useful because the experiment done in the paper deals with a chemostat containing a yeast population. There is a detailed section of the paper dedicated to the oxygen consumption and carbon dioxide production in the yeast. The information and data presented will be helpful in formulating a model for oxygen consumption and carbon dioxide in our project.
	#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.		#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.
-	#*Bailey, J.E. "Mathematical Modeling and Analysis in Biochemical Engineering: Past Accomplishments and Future Opportunities." Biotechnology Progress 14.1 (1998): 8-20. [[http://onlinelibrary.wiley.com/doi/10.1021/bp9701269/full ~~Mathematical~~ Paper]]	+	#*Bailey, J.E. "Mathematical Modeling and Analysis in Biochemical Engineering: Past Accomplishments and Future Opportunities." Biotechnology Progress 14.1 (1998): 8-20. [[http://onlinelibrary.wiley.com/doi/10.1021/bp9701269/full Paper 2 Link]]
	#*This paper will be useful because it talks about mathematical modeling in steady state conditions such as in chemostats. The paper specifically touches on chemostats involving yeast populations. I have trouble with the modeling so this paper should prove to be a good resource when I am modeling our project.		#*This paper will be useful because it talks about mathematical modeling in steady state conditions such as in chemostats. The paper specifically touches on chemostats involving yeast populations. I have trouble with the modeling so this paper should prove to be a good resource when I am modeling our project.

James P. McDonald at 02:07, 22 February 2013

2013-02-22T02:07:27Z

←Older revision		Revision as of 02:07, 22 February 2013
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	#Select one of these project topics as what you will present next week.		#Select one of these project topics as what you will present next week.
-	#*The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.	+	#*We chose project 2: The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.
	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.		#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Biological Paper]]		#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Biological Paper]]

James P. McDonald: added paper relevances

2013-02-22T02:06:56Z

added paper relevances

←Older revision		Revision as of 02:06, 22 February 2013
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		+	==Week 6 Assignment==
		+
	#Select one of these project topics as what you will present next week.		#Select one of these project topics as what you will present next week.
	#*The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.		#*The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.
	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.		#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Biological Paper]]		#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Biological Paper]]
		+	#*This paper will be useful because the experiment done in the paper deals with a chemostat containing a yeast population. There is a detailed section of the paper dedicated to the oxygen consumption and carbon dioxide production in the yeast. The information and data presented will be helpful in formulating a model for oxygen consumption and carbon dioxide in our project.
	#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.		#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.
	#*Bailey, J.E. "Mathematical Modeling and Analysis in Biochemical Engineering: Past Accomplishments and Future Opportunities." Biotechnology Progress 14.1 (1998): 8-20. [[http://onlinelibrary.wiley.com/doi/10.1021/bp9701269/full Mathematical Paper]]		#*Bailey, J.E. "Mathematical Modeling and Analysis in Biochemical Engineering: Past Accomplishments and Future Opportunities." Biotechnology Progress 14.1 (1998): 8-20. [[http://onlinelibrary.wiley.com/doi/10.1021/bp9701269/full Mathematical Paper]]
-		+	#*This paper will be useful because it talks about mathematical modeling in steady state conditions such as in chemostats. The paper specifically touches on chemostats involving yeast populations. I have trouble with the modeling so this paper should prove to be a good resource when I am modeling our project.

	{{James P. McDonald}}		{{James P. McDonald}}

	[[Category:BIOL398-03/S13]]		[[Category:BIOL398-03/S13]]

James P. McDonald: added link to math paper

2013-02-22T01:55:04Z

added link to math paper

←Older revision		Revision as of 01:55, 22 February 2013
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	#*The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.		#*The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.
	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.		#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
-	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html ~~Link to~~ Paper]]	+	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Biological Paper]]
	#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.		#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.
		+	#*Bailey, J.E. "Mathematical Modeling and Analysis in Biochemical Engineering: Past Accomplishments and Future Opportunities." Biotechnology Progress 14.1 (1998): 8-20. [[http://onlinelibrary.wiley.com/doi/10.1021/bp9701269/full Mathematical Paper]]

James P. McDonald: answer to number 1

2013-02-22T01:52:09Z

answer to number 1

←Older revision		Revision as of 01:52, 22 February 2013
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	#Select one of these project topics as what you will present next week.		#Select one of these project topics as what you will present next week.
		+	#*The chemostat model we’ve worked out does not predict the oxygen use and carbon dioxide production of Figure 1 B. Develop and analyze a model of the chemostat that includes oxygen and carbon dioxide.
	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.		#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Link to Paper]]		#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Link to Paper]]

James P. McDonald: added link to paper 1

2013-02-22T01:51:42Z

added link to paper 1

←Older revision		Revision as of 01:51, 22 February 2013
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	#Select one of these project topics as what you will present next week.		#Select one of these project topics as what you will present next week.
	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.		#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
-	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77.	+	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77. [[http://aem.asm.org/content/55/2/468.full.pdf+html Link to Paper]]
	#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.		#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.

James P. McDonald: added biological reference

2013-02-22T01:50:35Z

added biological reference

←Older revision		Revision as of 01:50, 22 February 2013
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		+	#Select one of these project topics as what you will present next week.
		+	#Find at least one reference beyond the two terSchure et al papers that will be helpful to your modeling effort. Discuss in your journal the relevance of the reference.
		+	#*Postma, Erik, et al. "Enzymic Analysis of the Crabtree Effect in Glucose-Limited Chemostat Cultures of ''Saccharomyces Cerevisiae''." Applied and Environmental Biology 55.2 (1989): 468-77.
		+	#Find a mathematical reference, be it a textbook, a paper, or a website, that is relevant to your project topic. Discuss in your journal the relevance of the reference.
		+
		+
	{{James P. McDonald}}		{{James P. McDonald}}

	[[Category:BIOL398-03/S13]]		[[Category:BIOL398-03/S13]]

James P. McDonald: added template and category

2013-02-21T00:49:47Z

added template and category

New page

{{James P. McDonald}}

[[Category:BIOL398-03/S13]]