Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals - Revision history

Vincent Rouilly at 22:32, 30 December 2009

Vincent Rouilly — Wed, 30 Dec 2009 22:32:56 GMT

←Older revision		Revision as of 22:32, 30 December 2009
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	'''Spring 2008'''		'''Spring 2008'''

-	'''Instructor:''' [[User:Vincent Rouilly\| Vincent Rouilly]]~~, Geoff Baldwin~~.	+	'''Instructor:''' [[User:Vincent Rouilly\| Vincent Rouilly]].

	'''Room:''' Biochemistry building, 310.		'''Room:''' Biochemistry building, 310.

Vincent Rouilly: /* Announcements */

Vincent Rouilly — Tue, 05 Feb 2008 14:43:26 GMT

Announcements

←Older revision		Revision as of 14:43, 5 February 2008
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	==Announcements==		==Announcements==
		+
		+	*'''[[User:Vincent Rouilly\|Vincent]] 08:43, 5 February 2008 (CST)''': Practical 2 has been rescheduled, and will run this thurs (7th Feb) from 9-12 in room 311 Biochem.

	*'''[[User:Johnsy\|Johnsy]] 04:57, 31 January 2008 (CST)''': Practical 2 Postponed until further notice.		*'''[[User:Johnsy\|Johnsy]] 04:57, 31 January 2008 (CST)''': Practical 2 Postponed until further notice.

Johnsy: /* Announcements */

Johnsy — Thu, 31 Jan 2008 10:58:36 GMT

Announcements

←Older revision		Revision as of 10:58, 31 January 2008
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	==Announcements==		==Announcements==

-	*[[User:Johnsy\|Johnsy]] 04:57, 31 January 2008 (CST): Practical 2 Postponed until further notice.	+	*'''[[User:Johnsy\|Johnsy]] 04:57, 31 January 2008 (CST)''': Practical 2 Postponed until further notice.

	*'''[[User:Vincent Rouilly\|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format).		*'''[[User:Vincent Rouilly\|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format).

Johnsy: /* Announcements */

Johnsy — Thu, 31 Jan 2008 10:57:40 GMT

Announcements

←Older revision		Revision as of 10:57, 31 January 2008
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	==Announcements==		==Announcements==
		+
		+	*[[User:Johnsy\|Johnsy]] 04:57, 31 January 2008 (CST): Practical 2 Postponed until further notice.

	*'''[[User:Vincent Rouilly\|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format).		*'''[[User:Vincent Rouilly\|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format).

Vincent Rouilly: /* Announcements */

Vincent Rouilly — Fri, 18 Jan 2008 17:08:23 GMT

Announcements

←Older revision		Revision as of 17:08, 18 January 2008
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	==Announcements==		==Announcements==
		+
		+	*'''[[User:Vincent Rouilly\|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format).

	*'''[[User:Vincent Rouilly\|Vincent]] 06:43, 18 January 2008 (CST)''': Practical-2 re-run planned on January 31st. Practical-2 report not due before February 7th, 5pm.		*'''[[User:Vincent Rouilly\|Vincent]] 06:43, 18 January 2008 (CST)''': Practical-2 re-run planned on January 31st. Practical-2 report not due before February 7th, 5pm.

Vincent Rouilly at 12:43, 18 January 2008

Vincent Rouilly — Fri, 18 Jan 2008 12:43:00 GMT

←Older revision		Revision as of 12:43, 18 January 2008
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	==Announcements==		==Announcements==
		+
		+	*'''[[User:Vincent Rouilly\|Vincent]] 06:43, 18 January 2008 (CST)''': Practical-2 re-run planned on January 31st. Practical-2 report not due before February 7th, 5pm.

	*'''[[User:Vincent Rouilly\|Vincent]] 04:06, 15 January 2008 (CST)''': Computer Lab, planned on Tuesday 15th Jan <font color=red> POSTPONED </font>. Computer Lab on Thursday 17th Jan (9-12), <font color=green> CONFIRMED </font>		*'''[[User:Vincent Rouilly\|Vincent]] 04:06, 15 January 2008 (CST)''': Computer Lab, planned on Tuesday 15th Jan <font color=red> POSTPONED </font>. Computer Lab on Thursday 17th Jan (9-12), <font color=green> CONFIRMED </font>

Vincent Rouilly: /* Announcements */

Vincent Rouilly — Tue, 15 Jan 2008 10:06:10 GMT

Announcements

←Older revision		Revision as of 10:06, 15 January 2008
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	==Announcements==		==Announcements==
		+
		+	*'''[[User:Vincent Rouilly\|Vincent]] 04:06, 15 January 2008 (CST)''': Computer Lab, planned on Tuesday 15th Jan <font color=red> POSTPONED </font>. Computer Lab on Thursday 17th Jan (9-12), <font color=green> CONFIRMED </font>

	* Registration to OpenWetWare required ([[Join\|Join OWW]])		* Registration to OpenWetWare required ([[Join\|Join OWW]])

Vincent Rouilly at 12:46, 13 January 2008

Vincent Rouilly — Sun, 13 Jan 2008 12:46:46 GMT

←Older revision		Revision as of 12:46, 13 January 2008
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	'''Spring 2008'''		'''Spring 2008'''

-	'''Instructor:''' [[User:Vincent Rouilly\| Vincent Rouilly]]	+	'''Instructor:''' [[User:Vincent Rouilly\| Vincent Rouilly]], Geoff Baldwin.

-	~~'''TAs:'''~~	+	'''Room:''' Biochemistry building, 310.
-		+
-	'''Room:''' ~~to be defined~~	+

	'''Welcome!'''		'''Welcome!'''
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	==Announcements==		==Announcements==

-	*You can find the latest changes to the ~~20.109~~ wiki at [[Special:Recentchanges/Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals \| Recent changes for ~~20.109~~]]	+	* Registration to OpenWetWare required ([[Join\|Join OWW]])
		+
		+	*You can find the latest changes to the course wiki at [[Special:Recentchanges/Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals \| Recent changes for the course]]

	*You can find old announcements [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/old announcements\| here]]		*You can find old announcements [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/old announcements\| here]]
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	==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_1\|Practical 1]]: Introduction (3h)==		==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_1\|Practical 1]]: Introduction (3h)==
-	* Short Presentation: "All the models are wrong, but some of them are useful", George Box.	+	* '''Short Presentation''': "All the models are wrong, but some of them are useful", George Box.
-	* Short Presentation: [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/CellDesigner_Tutorial \| CellDesigner Crash Course]]	+	* '''Short Presentation''': [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/CellDesigner_Tutorial \| CellDesigner Crash Course]]
	** Features and GUI		** Features and GUI
	** Kinetic Simulations		** Kinetic Simulations
	** SBML		** SBML
-	* Hands-on: Build your first kinetic models.	+	* '''Hands-on''': Build your first kinetic models.

	==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_2\|Practical 2]]: Gene Expression Modelling (3h)==		==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_2\|Practical 2]]: Gene Expression Modelling (3h)==
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	* Positive and Negative Feedback Gene Expression		* Positive and Negative Feedback Gene Expression

-	==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_3\|Practical 3]]: Genetic ~~Circuits~~ Modelling (3h)==	+	==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_3\|Practical 3]]: Genetic Circuit Modelling (3h)==
	* Genetic Inverter Characterisation		* Genetic Inverter Characterisation
	* Repressilator Characterisation		* Repressilator Characterisation
	* Mystery Device Characterisation		* Mystery Device Characterisation

Vincent Rouilly: New page: NOTOC {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}}
'''Spring 2008''...

Vincent Rouilly — Mon, 07 Jan 2008 17:10:42 GMT

New page: __NOTOC__ {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} <div style="padding: 10px; width: 720px; border: 5px solid #B3CD4E;"> '''Spring 2008''...

New page

__NOTOC__
{{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}}

<div style="padding: 10px; width: 720px; border: 5px solid #B3CD4E;">

'''Spring 2008'''

'''Instructor:''' [[User:Vincent Rouilly| Vincent Rouilly]]

'''TAs:'''

'''Room:''' to be defined

'''Welcome!'''

==Announcements==

*You can find the latest changes to the 20.109 wiki at [[Special:Recentchanges/Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals | Recent changes for 20.109]]

*You can find old announcements [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/old announcements| here]]

=Computer Lab Overview=

==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_1|Practical 1]]: Introduction (3h)==
* Short Presentation: "All the models are wrong, but some of them are useful", George Box.
* Short Presentation: [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/CellDesigner_Tutorial | CellDesigner Crash Course]]
** Features and GUI
** Kinetic Simulations
** SBML
* Hands-on: Build your first kinetic models.

==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_2|Practical 2]]: Gene Expression Modelling (3h)==
* Constitutive Gene Expression
* Activated and Repressed Gene Expression
* Positive and Negative Feedback Gene Expression

==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_3|Practical 3]]: Genetic Circuits Modelling (3h)==
* Genetic Inverter Characterisation
* Repressilator Characterisation
* Mystery Device Characterisation

Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals - Revision history

Vincent Rouilly at 22:32, 30 December 2009

Vincent Rouilly: /* Announcements */

Johnsy: /* Announcements */

Johnsy: /* Announcements */

Vincent Rouilly: /* Announcements */

Vincent Rouilly at 12:43, 18 January 2008

Vincent Rouilly: /* Announcements */

Vincent Rouilly at 12:46, 13 January 2008

Vincent Rouilly: New page: __NOTOC__ {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} '''Spring 2008''...

Vincent Rouilly: New page: NOTOC {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}}
'''Spring 2008''...