Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals
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(New page: __NOTOC__ {{Template:ImperialCollege Spring2008 SyntheticBiologyCourse ComputerModellingPractical}} <div style="padding: 10px; width: 720px; border: 5px solid #B3CD4E;"> '''Spring 2008''...) |
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'''Spring 2008''' | '''Spring 2008''' | ||
| - | '''Instructor:''' [[User:Vincent Rouilly| Vincent Rouilly]] | + | '''Instructor:''' [[User:Vincent Rouilly| Vincent Rouilly]]. |
| - | + | '''Room:''' Biochemistry building, 310. | |
| - | + | ||
| - | '''Room:''' | + | |
'''Welcome!''' | '''Welcome!''' | ||
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==Announcements== | ==Announcements== | ||
| - | *You can find the latest changes to the | + | *'''[[User:Vincent Rouilly|Vincent]] 08:43, 5 February 2008 (CST)''': Practical 2 has been rescheduled, and will run this thurs (7th Feb) from 9-12 in room 311 Biochem. |
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| + | *'''[[User:Johnsy|Johnsy]] 04:57, 31 January 2008 (CST)''': Practical 2 Postponed until further notice. | ||
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| + | *'''[[User:Vincent Rouilly|Vincent]] 11:08, 18 January 2008 (CST)''': First practical report due on '''Monday 21st January, before 5pm'''. You can submit by emailing to me (PDF or Word format). | ||
| + | |||
| + | *'''[[User:Vincent Rouilly|Vincent]] 06:43, 18 January 2008 (CST)''': Practical-2 re-run planned on January 31st. Practical-2 report not due before February 7th, 5pm. | ||
| + | |||
| + | *'''[[User:Vincent Rouilly|Vincent]] 04:06, 15 January 2008 (CST)''': Computer Lab, planned on Tuesday 15th Jan <font color=red> POSTPONED </font>. Computer Lab on Thursday 17th Jan (9-12), <font color=green> CONFIRMED </font> | ||
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| + | * Registration to OpenWetWare required ([[Join|Join OWW]]) | ||
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| + | *You can find the latest changes to the course wiki at [[Special:Recentchanges/Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals | Recent changes for the course]] | ||
*You can find old announcements [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/old announcements| here]] | *You can find old announcements [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/old announcements| here]] | ||
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==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_1|Practical 1]]: Introduction (3h)== | ==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_1|Practical 1]]: Introduction (3h)== | ||
| - | * Short Presentation: "All the models are wrong, but some of them are useful", George Box. | + | * '''Short Presentation''': "All the models are wrong, but some of them are useful", George Box. |
| - | * Short Presentation: [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/CellDesigner_Tutorial | CellDesigner Crash Course]] | + | * '''Short Presentation''': [[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/CellDesigner_Tutorial | CellDesigner Crash Course]] |
** Features and GUI | ** Features and GUI | ||
** Kinetic Simulations | ** Kinetic Simulations | ||
** SBML | ** SBML | ||
| - | * Hands-on: Build your first kinetic models. | + | * '''Hands-on''': Build your first kinetic models. |
==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_2|Practical 2]]: Gene Expression Modelling (3h)== | ==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_2|Practical 2]]: Gene Expression Modelling (3h)== | ||
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* Positive and Negative Feedback Gene Expression | * Positive and Negative Feedback Gene Expression | ||
| - | ==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_3|Practical 3]]: Genetic | + | ==[[Imperial_College/Courses/Spring2008/Synthetic_Biology/Computer_Modelling_Practicals/Practical_3|Practical 3]]: Genetic Circuit Modelling (3h)== |
* Genetic Inverter Characterisation | * Genetic Inverter Characterisation | ||
* Repressilator Characterisation | * Repressilator Characterisation | ||
* Mystery Device Characterisation | * Mystery Device Characterisation | ||
Current revision
Spring 2008
Instructor: Vincent Rouilly.
Room: Biochemistry building, 310.
Welcome!
Announcements
- Vincent 08:43, 5 February 2008 (CST): Practical 2 has been rescheduled, and will run this thurs (7th Feb) from 9-12 in room 311 Biochem.
- Johnsy 04:57, 31 January 2008 (CST): Practical 2 Postponed until further notice.
- Vincent 11:08, 18 January 2008 (CST): First practical report due on Monday 21st January, before 5pm. You can submit by emailing to me (PDF or Word format).
- Vincent 06:43, 18 January 2008 (CST): Practical-2 re-run planned on January 31st. Practical-2 report not due before February 7th, 5pm.
- Vincent 04:06, 15 January 2008 (CST): Computer Lab, planned on Tuesday 15th Jan POSTPONED . Computer Lab on Thursday 17th Jan (9-12), CONFIRMED
- Registration to OpenWetWare required (Join OWW)
- You can find the latest changes to the course wiki at Recent changes for the course
- You can find old announcements here
Computer Lab Overview
Practical 1: Introduction (3h)
- Short Presentation: "All the models are wrong, but some of them are useful", George Box.
- Short Presentation: CellDesigner Crash Course
- Features and GUI
- Kinetic Simulations
- SBML
- Hands-on: Build your first kinetic models.
Practical 2: Gene Expression Modelling (3h)
- Constitutive Gene Expression
- Activated and Repressed Gene Expression
- Positive and Negative Feedback Gene Expression
Practical 3: Genetic Circuit Modelling (3h)
- Genetic Inverter Characterisation
- Repressilator Characterisation
- Mystery Device Characterisation
