These are our daily objectives.
Output Amplification Model
Comparison between different amplification models (HIV1 and TEV) based on Michaelis Menten kinetics. However, Michaelis Menten kinetics does not apply to our system. Therefore, it had to be modelled from first principle (see below using law of mass action).
Comparison between these 3 different models (which are based on the law of mass action): Simple production, 1-step and 2-step amplification
Here are the variables and constants that are used in the Output Amplification Model.
Protein Display Model
This is a model showing when the ComD receptor will be activated (after proteins have been cleaved).
Here are the variables and constants that are used in the Protein Display Model.