IGEM:Imperial/2010/Modelling: Difference between revisions
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==[http://www.openwetware.org/wiki/IGEM:Imperial/2010/Experiments1 Experiments for the Output Amplification Model]== | ==[http://www.openwetware.org/wiki/IGEM:Imperial/2010/Experiments1 Experiments for the Output Amplification Model]== | ||
==[http://www.openwetware.org/wiki/IGEM:Imperial/2010/Experiments2 Experiments for the Protein Display Model]== | ==[http://www.openwetware.org/wiki/IGEM:Imperial/2010/Experiments2 Experiments for the Protein Display Model]== | ||
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<div class=" | <div class="accordionButton"><b>Objectives</b></div> | ||
< | <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Objectives">Here are our daily objectives.</a><br /><br /></div> | ||
</div> | <div class="accordionButton"><b>Output Amplification Model</b></div> | ||
< | <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Michaelis_Menten">Model based on Michaelis Menten Kinetics</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Mass_Action">Model based on Law of Mass Action</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Variables1">Variables and Constants</a><br /><br /></div> | ||
<div class=" | <div class="accordionButton"><b>Protein Display Model</b></div> | ||
< | <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Protein_Display">Protein Display Model</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Variables2">Variables and Constants</a><br /><br /></div> | ||
< | <div class="accordionButton"><b>Feedback from Wetlab</b></div> | ||
< | <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Experiments1">Experiments for Output Amplification Model</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Modelling">Experiments for Protein Display Model</a><br /></div> | ||
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Revision as of 07:03, 8 September 2010
Objectives
These are our daily objectives.
Output Amplification Model
Model based on Michaelis Menten Kinetics
Comparison between different amplification models (HIV1 and TEV) based on Michaelis Menten kinetics. However, Michaelis Menten kinetics does not apply to our system. Therefore, it had to be modelled from first principle (see below using law of mass action).
Model based on Law of Mass Action
Comparison between these 3 different models (which are based on the law of mass action): Simple production, 1-step and 2-step amplification
Variables and Constants for this Model
Here are the variables and constants that are used in the Output Amplification Model.
Protein Display Model
Protein Display Model
This is a model showing when the ComD receptor will be activated (after proteins have been cleaved).
Variables and constants for this Model
Here are the variables and constants that are used in the Protein Display Model.
Feedback from Wetlab
Experiments for the Output Amplification Model
Experiments for the Protein Display Model
<html> <head> <script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4.2/jquery.min.js"></"></script> <script type="text/javascript"> $(document).ready(function() {
$('div.accordionButton').click(function() {
$(this).next().slideDown('normal'); });
$("div.accordionContent").hide();
});
</script> <style type="text/css">
- wrapper {
width: 1000px; margin-left: auto; margin-right: auto; }
.accordionButton { width: 1000px;
height: 30px;
float: left; text-align: center;
background: #FF9900;
border-bottom: 1px solid #FFFFFF; cursor: pointer; }
.accordionContent { width: 1000px; float: left;
text-align: center;
background: #FFFF99; display: none; } </style> </head> <body> <div id="wrapper"> <div class="accordionButton"><b>Objectives</b></div> <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Objectives">Here are our daily objectives.</a><br /><br /></div> <div class="accordionButton"><b>Output Amplification Model</b></div> <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Michaelis_Menten">Model based on Michaelis Menten Kinetics</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Mass_Action">Model based on Law of Mass Action</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Variables1">Variables and Constants</a><br /><br /></div> <div class="accordionButton"><b>Protein Display Model</b></div> <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Protein_Display">Protein Display Model</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Variables2">Variables and Constants</a><br /><br /></div> <div class="accordionButton"><b>Feedback from Wetlab</b></div> <div class="accordionContent"><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Experiments1">Experiments for Output Amplification Model</a><br /><br /><a href="http://www.openwetware.org/wiki/IGEM:Imperial/2010/Modelling">Experiments for Protein Display Model</a><br /></div> </div> </body> </html>