IGEM:IMPERIAL/2008/New/Appendices - Revision history

Zheng Da Clinton Goh at 11:27, 30 September 2008

2008-09-30T11:27:28Z

←Older revision		Revision as of 11:27, 30 September 2008
Line 11:		Line 11:
	===Modelling Motility===		===Modelling Motility===
	*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''		*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''
-	*[[Media:Traj.m\|Generates trajectory based on generated parameters]]	+	*'''[[Media:Traj.m\|Generates trajectory based on generated parameters]]'''
-	*[[Media:Traj1.m\|Generates first run of the trajectory, to be called by modelfit1.m]]	+	*'''[[Media:Traj1.m\|Generates first run of the trajectory, to be called by modelfit1.m]]'''
-	*[[Media:Traj2.m\|Generates second run of the trajectory, to be called by modelfit2.m ]]	+	*'''[[Media:Traj2.m\|Generates second run of the trajectory, to be called by modelfit2.m ]]'''
-	*[[~~Image~~:Modelfit1.m\|Generates parameters for the first run of cell trajectory]]	+	*'''[[Media:Modelfit1.m\|Generates parameters for the first run of cell trajectory]]'''
-	*[[Media:Modelfit2.m‎\|Generates parameters for the second run of cell trajectory]]	+	*'''[[Media:Modelfit2.m‎\|Generates parameters for the second run of cell trajectory]]'''

	===Synthetic Video===		===Synthetic Video===

Zheng Da Clinton Goh at 11:26, 30 September 2008

2008-09-30T11:26:47Z

←Older revision		Revision as of 11:26, 30 September 2008
Line 11:		Line 11:
	===Modelling Motility===		===Modelling Motility===
	*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''		*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''
-	*	+	*[[Media:Traj.m\|Generates trajectory based on generated parameters]]
-	*	+	*[[Media:Traj1.m\|Generates first run of the trajectory, to be called by modelfit1.m]]
-	*	+	*[[Media:Traj2.m\|Generates second run of the trajectory, to be called by modelfit2.m ]]
-	*	+	*[[Image:Modelfit1.m\|Generates parameters for the first run of cell trajectory]]
		+	*[[Media:Modelfit2.m‎\|Generates parameters for the second run of cell trajectory]]

	===Synthetic Video===		===Synthetic Video===

Zheng Da Clinton Goh at 11:21, 30 September 2008

2008-09-30T11:21:23Z

←Older revision		Revision as of 11:21, 30 September 2008
Line 11:		Line 11:
	===Modelling Motility===		===Modelling Motility===
	*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''		*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''
		+	*
		+	*
		+	*
		+	*

	===Synthetic Video===		===Synthetic Video===

Qin Qi at 17:43, 27 September 2008

2008-09-27T17:43:56Z

←Older revision		Revision as of 17:43, 27 September 2008
Line 1:		Line 1:
	{{Imperial/StartPage2}}		{{Imperial/StartPage2}}
		+	<br>
		+	<br>
		+	<font size=6px color=#E5EBFF><b>Appendices for Dry Lab</b></font>
		+	<br>
		+	<br>

-	~~= '''Appendices for Dry Lab'''=~~	+	{{Imperial/Box1\|\|
-		+
	==MATLAB Files==		==MATLAB Files==

Line 42:		Line 46:

	*'''[[Media:Modelling_Growth_Curve.pdf \| Dry Lab Tutorial 4: Modelling the Growth Curve]]'''		*'''[[Media:Modelling_Growth_Curve.pdf \| Dry Lab Tutorial 4: Modelling the Growth Curve]]'''
-		+	}}
	{{Imperial/EndPage\|Motility\|Appendices}}		{{Imperial/EndPage\|Motility\|Appendices}}

Prudence Wing-Yan Wong: /* Modelling Growth */

2008-09-19T11:41:22Z

Modelling Growth

←Older revision		Revision as of 11:41, 19 September 2008
Line 24:		Line 24:
	*'''[[Media:Test.m\|Simulation of the Hill Function]]'''		*'''[[Media:Test.m\|Simulation of the Hill Function]]'''
	*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''		*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''
-	*'''[[Media:Growth_curve.m\|The growth model]]'''	+	*'''[[Media:Growth_curve.m\|The growth model (N.B. Here the concentration of nutrients with respect to time is assumed to follow the trend given by a piecewise function)]]'''
	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''		*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''		*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''

Prudence Wing-Yan Wong: /* Modelling Growth */

2008-09-18T18:49:50Z

Modelling Growth

←Older revision		Revision as of 18:49, 18 September 2008
Line 28:		Line 28:
	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''		*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''
	*'''[[Media:Experiment_data.xls\|Excel spread sheet of Data from experiment + a log graph of experimental results]]'''		*'''[[Media:Experiment_data.xls\|Excel spread sheet of Data from experiment + a log graph of experimental results]]'''
-	*'''[[Media:Log_graph.tif\|Log graph: Log(time) vs Log(OD60)]]'''

	===Modelling Genetic Circuit===		===Modelling Genetic Circuit===

Prudence Wing-Yan Wong: /* Modelling Growth */

2008-09-18T18:49:16Z

Modelling Growth

←Older revision		Revision as of 18:49, 18 September 2008
Line 28:		Line 28:
	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''		*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''
	*'''[[Media:Experiment_data.xls\|Excel spread sheet of Data from experiment + a log graph of experimental results]]'''		*'''[[Media:Experiment_data.xls\|Excel spread sheet of Data from experiment + a log graph of experimental results]]'''
		+	*'''[[Media:Log_graph.tif\|Log graph: Log(time) vs Log(OD60)]]'''

	===Modelling Genetic Circuit===		===Modelling Genetic Circuit===

Prudence Wing-Yan Wong: /* Modelling Growth */

2008-09-18T18:35:57Z

Modelling Growth

←Older revision		Revision as of 18:35, 18 September 2008
Line 27:		Line 27:
	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''		*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''		*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''
-	*'''[[Media:Experiment_data.xls\|Data from experiment + a log graph of experimental results]]'''	+	*'''[[Media:Experiment_data.xls\|Excel spread sheet of Data from experiment + a log graph of experimental results]]'''

	===Modelling Genetic Circuit===		===Modelling Genetic Circuit===

Prudence Wing-Yan Wong: /* Modelling Growth */

2008-09-18T18:35:26Z

Modelling Growth

←Older revision		Revision as of 18:35, 18 September 2008
Line 26:		Line 26:
	*'''[[Media:Growth_curve.m\|The growth model]]'''		*'''[[Media:Growth_curve.m\|The growth model]]'''
	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''		*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
-	*'''[[Media:Test6.m\|~~Results~~ from wetlab]]'''	+	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''
		+	*'''[[Media:Experiment_data.xls\|Data from experiment + a log graph of experimental results]]'''

	===Modelling Genetic Circuit===		===Modelling Genetic Circuit===

Prudence Wing-Yan Wong: /* Modelling Growth */

2008-09-18T18:12:05Z

Modelling Growth

←Older revision		Revision as of 18:12, 18 September 2008
Line 25:		Line 25:
	*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''		*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''
	*'''[[Media:Growth_curve.m\|The growth model]]'''		*'''[[Media:Growth_curve.m\|The growth model]]'''
-	*'''[[Media:~~Growth3~~.m\|The growth model that fits the experimental data]]'''	+	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
	*'''[[Media:Test6.m\|Results from wetlab]]'''		*'''[[Media:Test6.m\|Results from wetlab]]'''

←Older revision		Revision as of 11:27, 30 September 2008
Line 11:		Line 11:
	===Modelling Motility===		===Modelling Motility===
	*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''		*'''[[Media:Getdata.m\|Data extraction algorithm. Obtains motility properties from trajectory data]]'''
-	*[[Media:Traj.m\|Generates trajectory based on generated parameters]]	+	*'''[[Media:Traj.m\|Generates trajectory based on generated parameters]]'''
-	*[[Media:Traj1.m\|Generates first run of the trajectory, to be called by modelfit1.m]]	+	*'''[[Media:Traj1.m\|Generates first run of the trajectory, to be called by modelfit1.m]]'''
-	*[[Media:Traj2.m\|Generates second run of the trajectory, to be called by modelfit2.m ]]	+	*'''[[Media:Traj2.m\|Generates second run of the trajectory, to be called by modelfit2.m ]]'''
-	*[[~~Image~~:Modelfit1.m\|Generates parameters for the first run of cell trajectory]]	+	*'''[[Media:Modelfit1.m\|Generates parameters for the first run of cell trajectory]]'''
-	*[[Media:Modelfit2.m‎\|Generates parameters for the second run of cell trajectory]]	+	*'''[[Media:Modelfit2.m‎\|Generates parameters for the second run of cell trajectory]]'''

	===Synthetic Video===		===Synthetic Video===

←Older revision		Revision as of 11:41, 19 September 2008
Line 24:		Line 24:
	*'''[[Media:Test.m\|Simulation of the Hill Function]]'''		*'''[[Media:Test.m\|Simulation of the Hill Function]]'''
	*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''		*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''
-	*'''[[Media:Growth_curve.m\|The growth model]]'''	+	*'''[[Media:Growth_curve.m\|The growth model (N.B. Here the concentration of nutrients with respect to time is assumed to follow the trend given by a piecewise function)]]'''
	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''		*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''		*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''

←Older revision		Revision as of 18:35, 18 September 2008
Line 26:		Line 26:
	*'''[[Media:Growth_curve.m\|The growth model]]'''		*'''[[Media:Growth_curve.m\|The growth model]]'''
	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''		*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
-	*'''[[Media:Test6.m\|~~Results~~ from wetlab]]'''	+	*'''[[Media:Test6.m\|M-file for generating a plot of results from wetlab]]'''
		+	*'''[[Media:Experiment_data.xls\|Data from experiment + a log graph of experimental results]]'''

	===Modelling Genetic Circuit===		===Modelling Genetic Circuit===

←Older revision		Revision as of 18:12, 18 September 2008
Line 25:		Line 25:
	*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''		*'''[[Media:Test2.m\|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''
	*'''[[Media:Growth_curve.m\|The growth model]]'''		*'''[[Media:Growth_curve.m\|The growth model]]'''
-	*'''[[Media:~~Growth3~~.m\|The growth model that fits the experimental data]]'''	+	*'''[[Media:Growth4.m\|The growth model that fits the experimental data]]'''
	*'''[[Media:Test6.m\|Results from wetlab]]'''		*'''[[Media:Test6.m\|Results from wetlab]]'''