IGEM:IMPERIAL/2006/project/Oscillator/project browser/Predator Construct: Difference between revisions
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{| border="1" cellpadding="0" width="100%" | {| border="1" cellpadding="0" width="100%" | ||
|- | |- style="background:#CCCCFF" | ||
!height="25pt" width="80pt"| Super Parts | !height="25pt" width="80pt"| Super Parts | ||
!colspan="2" | [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Full_System | Molecular Prey-Predator Oscillator]] | !colspan="2" | [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Full_System | Molecular Prey-Predator Oscillator]] | ||
|- | |- style="background:#FF9966" | ||
!height=" | !height="50" width="80pt"|Actual Part | ||
!colspan="2"| Logo of the Part | !colspan="2"| Logo of the Part | ||
|- | |- style="background:#CCCCFF" | ||
!height="25pt" width="80pt"|Sub Parts | !height="25pt" width="80pt"|Sub Parts | ||
! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Sensing_Predator_Construct| Test Sensing Predator Construct]] | ! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Sensing_Predator_Construct| Test Sensing Predator Construct]] | ||
! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Killing_Predator_Construct| Test Killing Predator Construct]] | ! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Killing_Predator_Construct| Test Killing Predator Construct]] | ||
|} | |} | ||
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<ul> | <ul> | ||
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* | ==Motivations== | ||
* | *This part is driving the molecular events associated with the '''predator''' in the [[IGEM:IMPERIAL/2006/project/Oscillator/Modelling/LV|Lotka-Volterra model]]. | ||
* | *This part is supposed to interface with the [[IGEM:IMPERIAL/2006/project/Oscillator/project_browser/Prey_Construct|'''prey-construct''']]. | ||
*To satify the Lotka-Volterra dynamic of the predator, this part has to fullfil two properties: | |||
**'''promote the expression of the predator-molecule''' according to the prey and predator population. | |||
**'''degrade the prey-molecule''' according to the population of prey and predator | |||
*add links to other parts if necessary or other part of the wiki. | |||
==Part interface== | |||
{| border="0" width="100% align="center" | |||
|- | |||
| | |||
{| border="1" cellpadding="15" width="100%" | |||
|- | |||
! style="background:#66CC99"| INPUTS !!style="background:#FF3333"| OUTPUTS | |||
|- | |||
|rowspan = "2" | Prey || Predator growth | |||
|- | |||
| Prey killing | |||
|} | |||
|| | |||
[[Image:iGEM_IMPERIAL_PreadatorConstructSystemIcon.png|right|350px]] | |||
|} | |||
==Expected behavior and performances== | |||
(try to write your specifications in tables. Here are just 2 examples) | |||
{| border="1" width="100%" | |||
Interface specifiactions | |||
|- | |||
! style="background:lightgrey"|Characteristics !! Prey !! Predator expression !! Predator Killing | |||
|- | |||
| Range || Sensitivity to the prey should at least match the dynamic range of the prey || To be characterized || To be characterized | |||
|- | |||
| Transfer function || n/a || [[Image:IGEM_IMPERIAL_TransferFunctionPredator1.png|250px]] || [[Image:IGEM_IMPERIAL_TransferFunctionPredator2.png|250px]] | |||
|- | |||
| Variability|| n/a || population level + day-to-day variability low || population level + day-to-day variability low | |||
|} | |||
{| border="1" width="100%" | |||
System level specifications | |||
|- | |||
! style="background:lightgrey" width="100pt" |Properties !! Comments | |||
|- | |||
| Range|| | |||
|- | |||
| Transfer function || | |||
|- | |||
| Latency || | |||
|- | |||
| Robustness || | |||
|- | |||
| Variability || | |||
|- | |||
| properties 3 || | |||
|- | |||
| properties 4 || | |||
|} | |||
==Open issues== | |||
*Getting linear relationship is going to be challenging in a biological system. | |||
*Saturation in the response may have to be taken into account (characterized and defined). |
Revision as of 07:16, 19 October 2006
Super Parts | Molecular Prey-Predator Oscillator | |
---|---|---|
Actual Part | Logo of the Part | |
Sub Parts | Test Sensing Predator Construct | Test Killing Predator Construct |
Motivations
- This part is driving the molecular events associated with the predator in the Lotka-Volterra model.
- This part is supposed to interface with the prey-construct.
- To satify the Lotka-Volterra dynamic of the predator, this part has to fullfil two properties:
- promote the expression of the predator-molecule according to the prey and predator population.
- degrade the prey-molecule according to the population of prey and predator
- add links to other parts if necessary or other part of the wiki.
Part interface
|
Expected behavior and performances
(try to write your specifications in tables. Here are just 2 examples)
Interface specifiactions
Properties | Comments |
---|---|
Range | |
Transfer function | |
Latency | |
Robustness | |
Variability | |
properties 3 | |
properties 4 |
Open issues
- Getting linear relationship is going to be challenging in a biological system.
- Saturation in the response may have to be taken into account (characterized and defined).