IGEM:Harvard/2006/Cyanobacteria/Notebook/2006-8-14: Difference between revisions

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It appears that our vector self-ligated.
It appears that our vector self-ligated.
==Digestion Assay for 8/14==
{| {{table}}
| align="center" style="background:#f0f0f0;"|
| align="center" style="background:#f0f0f0;"|'''Label'''
| align="center" style="background:#f0f0f0;"|'''DNA'''
| align="center" style="background:#f0f0f0;"|'''Amount'''
| align="center" style="background:#f0f0f0;"|'''Water'''
| align="center" style="background:#f0f0f0;"|'''Enzymes'''
| align="center" style="background:#f0f0f0;"|'''Amount'''
| align="center" style="background:#f0f0f0;"|'''NEB buffer'''
| align="center" style="background:#f0f0f0;"|'''BSA (100x)'''
| align="center" style="background:#f0f0f0;"|'''Time'''
| align="center" style="background:#f0f0f0;"|'''Master'''
| align="center" style="background:#f0f0f0;"|'''Total'''
|-
| Digests||1||J04500||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||2 hrs ||1 ||25 µL
|-
| ||2||J04500||19.5 µL||1.75 µL||SpeI & PstI||0.5 µL, 0.5 µL||Buffer 2 (2.5 µL)||0.25 µL ||2 hrs ||2 ||25 µL
|-
| ||3||J04500||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||4 hrs ||1 ||25 µL
|-
| ||4||J04500||19.5 µL||1.75 µL||SpeI & PstI||0.5 µL, 0.5 µL||Buffer 2 (2.5 µL)||0.25 µL ||4 hrs ||2 ||25 µL
|-
| ||5||KaiA||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||2 hrs ||1 ||25 µL
|-
| ||6||KaiB||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||2 hrs ||1 ||25 µL
|-
| ||7||KaiC||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||2 hrs ||1 ||25 µL
|-
| ||8||KaiA||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||4 hrs ||1 ||25 µL
|-
| ||9||KaiB||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||4 hrs ||1 ||25 µL
|-
| ||10||KaiC||19.5 µL||1.75 µL||XbaI & PstI||0.5 µL, 0.5 µL||Buffer 3 (2.5 µL)||0.25 µL ||4 hrs ||1 ||25 µL
|-
| Master Mixes||1|| - || - ||15.75 µL||XbaI & PstI||4.5 µL, 4.5 µL||Buffer 3 (22.5 µL)||2.25 µL || - || - ||49.5 µL
|-
| ||2|| - || - ||7 µL||SpeI & PstI||2 µL, 2 µL||Buffer 2 (10 µL)||1 µL || - || - ||22 µL
|-}

Revision as of 12:41, 14 August 2006

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To-do

  • Midiprep pSB4A, J04500 (online instructions here, page 16)
  • Insert:
    1. Digest miniprepped KaiA/B/C in GeneArt vector with X-P
  • Backbone:
    1. Digest J04500\S-P, \X-P (for Stage I constructs and BB high-copy)
    2. Find and transform B0034
  • KaiABC ligation:
    1. KaiABC\X-P + J04500\S-P (stage I)
    2. KaiABC\X-P + pSB1AK3 (well-formed BB)
    3. KaiABC\X-P + B0034\S-P (stage I)
  • Sequencing:
    1. Sequence miniprepped KaiA/B/C + GA vectors, natural KaiA
  • Western blots:
    1. Ligate GFP dev and pSB4A3
    2. Inoculate GFP dev + pSB1A2

E-gel images of colony PCR of J04500 + KaiA/B/C

Click for legend
Click for legend


It appears that our vector self-ligated.

Digestion Assay for 8/14

Label DNA Amount Water Enzymes Amount NEB buffer BSA (100x) Time Master Total
Digests 1 J04500 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 2 hrs 1 25 µL
2 J04500 19.5 µL 1.75 µL SpeI & PstI 0.5 µL, 0.5 µL Buffer 2 (2.5 µL) 0.25 µL 2 hrs 2 25 µL
3 J04500 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 4 hrs 1 25 µL
4 J04500 19.5 µL 1.75 µL SpeI & PstI 0.5 µL, 0.5 µL Buffer 2 (2.5 µL) 0.25 µL 4 hrs 2 25 µL
5 KaiA 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 2 hrs 1 25 µL
6 KaiB 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 2 hrs 1 25 µL
7 KaiC 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 2 hrs 1 25 µL
8 KaiA 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 4 hrs 1 25 µL
9 KaiB 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 4 hrs 1 25 µL
10 KaiC 19.5 µL 1.75 µL XbaI & PstI 0.5 µL, 0.5 µL Buffer 3 (2.5 µL) 0.25 µL 4 hrs 1 25 µL
Master Mixes 1 - - 15.75 µL XbaI & PstI 4.5 µL, 4.5 µL Buffer 3 (22.5 µL) 2.25 µL - - 49.5 µL
2 - - 7 µL SpeI & PstI 2 µL, 2 µL Buffer 2 (10 µL) 1 µL - - 22 µL
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