IGEM:Cambridge/2008/Notebook/Bacillus

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==''B. subtilis'' Promoter Testing with Beta-galactosidase Assay==
==''B. subtilis'' Promoter Testing with Beta-galactosidase Assay==
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We are aiming to characterize four different ''Bacillus subtilis'' promoters using the beta-galactosidase assay. (Protocol for beta-galactosidase assay as described [http://openwetware.org/wiki/Beta-Galactosidase_Assay_(A_better_Miller) here]
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We are aiming to characterize four different ''Bacillus subtilis'' promoters on the ECE112 backbone using the beta-galactosidase assay. (Protocol for beta-galactosidase assay as described [http://openwetware.org/wiki/Beta-Galactosidase_Assay_(A_better_Miller) here]
B. subtilis Promoters to be Tested:
B. subtilis Promoters to be Tested:
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* Pupp - constitutive, a ''Bacillus cereus'' promoter present on ''B. subtilis'' vector ECE166
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* Pupp - a strong constitutive ''Bacillus cereus'' promoter present on ''B. subtilis'' vector ECE166
* Ppac - constitutive, present on ''B. subtilis'' vector ECE151
* Ppac - constitutive, present on ''B. subtilis'' vector ECE151
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* Pspac - lactose inducible, present on ''B. subtilis'' vector ECE151
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* Pspac - IPTG inducible, present on ''B. subtilis'' vector ECE151
* Pxyl - xylose inducible, present on ''B. subtilis'' vector ECE153
* Pxyl - xylose inducible, present on ''B. subtilis'' vector ECE153
Information about the ''B. subtilis'' vectors can be found [http://openwetware.org/wiki/IGEM:Cambridge/2008/Turing_Pattern_Formation/Vectors here]
Information about the ''B. subtilis'' vectors can be found [http://openwetware.org/wiki/IGEM:Cambridge/2008/Turing_Pattern_Formation/Vectors here]
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The Schematic:
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=Links=
=Links=

Revision as of 10:57, 5 September 2008




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Working with B.subtilis

Building on the work of the last year's Cambridge iGEM team, we are exploring applications of the gram-positive chassis B.subtillis. Easy to handle and transform, this bacterium is much better to use than E.coli wherever protein import/export is concerned, e.g. in our signalling project. An important part of our effort is to establish standard protocols and parts to work in B.subtillis, characterise control elements, and develop new vectors. You can find our Bacillus protocols here.

Creating new Biobrick-compatible B.subtilis vectors

We are using the In-Fusion™ PCR method from ClonTech to create new Biobrick-compatible integrative and episomal vectors. These vectors will allow us to insert Biobricks into the Bacillus subtilis genome at the AmyE locus and as a 3-5 copy plasmid that will replicate autonomously in Bacillus.

pBSint1 Vector pBSep1 Vector

Testing B.subtilis promoters and RBSs

We are seeking to test the expression strength and response to inducers in several promoters in B.subtilis, in combination with different Bacillus-specific ribosome binding sites.

B. subtilis Promoter Testing with Beta-galactosidase Assay

We are aiming to characterize four different Bacillus subtilis promoters on the ECE112 backbone using the beta-galactosidase assay. (Protocol for beta-galactosidase assay as described here

B. subtilis Promoters to be Tested:

  • Pupp - a strong constitutive Bacillus cereus promoter present on B. subtilis vector ECE166
  • Ppac - constitutive, present on B. subtilis vector ECE151
  • Pspac - IPTG inducible, present on B. subtilis vector ECE151
  • Pxyl - xylose inducible, present on B. subtilis vector ECE153

Information about the B. subtilis vectors can be found here

The Schematic:


Links

B. Subtilis Transformation Protcol - Electroporation

Bongers et al. … of a Subtilin-Regulated Expression System in Bacillus subtilis: Strict Control of Gene Expression …. Applied and Environmental Microbiology (2005)

  • SURE: handy expression system for B. subtilis
  • What about feedback/regulation effects of subtilin on the cell

Expression and characterization of aiiA gene from Bacillus subtilis BS-1.

  • (Some strains of) Bacillus subtilis produces a gene called aiiA that degrades AHL molecules from gram-negative bacteria
  • this is biobricked

Links to Cambridge 2007 Wiki



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