IGEM:Arizona State/2014/Notebook/asu igem 2014/2014/08/12: Difference between revisions

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==8/12==
==8/12==
* Transformed ligation mixture
 
<u>Ethanol</u>
 
Got plasmid PACYC Duet-pdc-adhb in strain DH10b and strain BL21 from Nielsen's lab to use for ethanol production
*Plated both in preparation to transform plasmid into BL21 Strain.
 
 
<u>Transformed ligation mixture</u>
##Ligation mixture
##Ligation mixture
##- Control
##- Control
##+ Control (ACC Plasmid)
##+ Control (ACC Plasmid)


PCR Amplification of ACC Stuff
PCR Amplification of ACC parts <br style="clear:both;"/><br>
*
First, the dry primers were made into 100 μM master stocks. 1 μL was added per .1 nm. For example, a 31.2 nm sample had 312 μL added. This master stock was then diluted into working stocks of 5 μM. This was done by adding 1 μL of master mix into 19 μL H2O. This was done for all eight primers , four forward and four reverse.
 
 
The ACC plasmid was then diluted from 54.2 μg/μL to about 1 μg/μL through a 1/50 dilution.
 


<u>Ethanol</u>
PCR mix for all four reactions (accA, accB, accC, and accD)
 
: PCR reaction
{| {{table}} border="1" align=center
|- valign="top"
| bgcolor=#cfcfcf | Reagent
| bgcolor=#cfcfcf |
|-
|| 2x GoTaq Master Mix || 12.5
|-
|| Forward Primer (working stock)|| 1.0 
|-
|| Reverse Primer (working stock) || 1.0 
|-
|| Template DNA (Diluted) || 1.0 
|-
|| H<sub>2</sub>O || 9.5
|-
|| Total || 25.0
|-
|| Initial denature step of 95 °C for 2 min
|-
|| PCR cycle: 95 °C for 30 sec -> 45 °C for 45 sec -> 73 °C for 80 sec
|-
|| Final annealing step at 73 °C for 5 min
|-


Got plasmid PACYC Duet-pdc-adhb in strain DH10b and strain BL21 from Nielsen's lab to use for ethanol production
*Plated both in preparation to transform plasmid into BL21 Strain.




Revision as of 11:04, 15 August 2014

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8/12

Ethanol

Got plasmid PACYC Duet-pdc-adhb in strain DH10b and strain BL21 from Nielsen's lab to use for ethanol production

  • Plated both in preparation to transform plasmid into BL21 Strain.


Transformed ligation mixture

    1. Ligation mixture
    2. - Control
    3. + Control (ACC Plasmid)

PCR Amplification of ACC parts

First, the dry primers were made into 100 μM master stocks. 1 μL was added per .1 nm. For example, a 31.2 nm sample had 312 μL added. This master stock was then diluted into working stocks of 5 μM. This was done by adding 1 μL of master mix into 19 μL H2O. This was done for all eight primers , four forward and four reverse.


The ACC plasmid was then diluted from 54.2 μg/μL to about 1 μg/μL through a 1/50 dilution.


PCR mix for all four reactions (accA, accB, accC, and accD)

PCR reaction
Reagent
2x GoTaq Master Mix 12.5
Forward Primer (working stock) 1.0
Reverse Primer (working stock) 1.0
Template DNA (Diluted) 1.0
H2O 9.5
Total 25.0
Initial denature step of 95 °C for 2 min
PCR cycle: 95 °C for 30 sec -> 45 °C for 45 sec -> 73 °C for 80 sec
Final annealing step at 73 °C for 5 min
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