HughesLab:JTK Cycle: Difference between revisions
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JTK_Cycle is a non-parametric algorithm developed in collaboration with [http://scholar.google.com/citations?user=1hw5bX4AAAAJ&hl=en Professor Karl Kornacker], Ohio State University, and [http://bioinf.itmat.upenn.edu/hogeneschlab/index.php Professor John Hogenesch], University of Pennsylvania School of Medicine. Its purpose is to identify rhythmic components in large, genome-scale | JTK_Cycle is a non-parametric algorithm developed in collaboration with [http://scholar.google.com/citations?user=1hw5bX4AAAAJ&hl=en Professor Karl Kornacker], Ohio State University, and [http://bioinf.itmat.upenn.edu/hogeneschlab/index.php Professor John Hogenesch], University of Pennsylvania School of Medicine. Its purpose is to identify rhythmic components in large, genome-scale | ||
data sets, and estimate their period length, phase, and amplitude.</p> | |||
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JTK_Cycle runs in [http://en.wikipedia.org/wiki/R_%28programming_language%29 R], a statistical language that can be downloaded [http://www.r-project.org/ here]. | JTK_Cycle runs in [http://en.wikipedia.org/wiki/R_%28programming_language%29 R], a statistical language that can be downloaded [http://www.r-project.org/ here]. The scripts necessary to run JTK_Cycle are available as a .zip: [[Image:JTK_Cycle.zip]]. This compressed file also contains a User's Guide and several example data sets. | ||
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Revision as of 11:12, 8 January 2013
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JTK_Cycle
ROC curves showing that JTK_Cycle out-performs COSOPT and Fisher's G-test.
JTK_Cycle is a non-parametric algorithm developed in collaboration with Professor Karl Kornacker, Ohio State University, and Professor John Hogenesch, University of Pennsylvania School of Medicine. Its purpose is to identify rhythmic components in large, genome-scale data sets, and estimate their period length, phase, and amplitude.
JTK_Cycle runs in R, a statistical language that can be downloaded here. The scripts necessary to run JTK_Cycle are available as a .zip: File:JTK Cycle.zip. This compressed file also contains a User's Guide and several example data sets.
Hughes Lab
Department of Biology
University of Missouri, St. Louis
(Starting in August, 2013)
