Hoatlin:Internal Lab Site: Difference between revisions

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[[Image:RainbowLong.jpg|750px|Equipped with his five senses, man explores the universe around him and calls the adventure Science.  ~Edwin Powell Hubble, The Nature of Science, 1954]]
{{HoatlinLab}}
==[[Hoatlin:Lab Meetings |Lab Meetings]]==
==[[Hoatlin:Lab Meetings |Lab Meetings]]==


Tuesdays in MRB 634, 2PM-3:30.
Tuesdays in MRB 634, 2:30-4PM.
 
==[[Hoatlin:Keeping Frogs|Keeping Frogs ]]==
 
 
 
==Reference==
==Reference==
*[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=PureSearch&db=pubmed&details_term=fanconi%20anemia%5BText%20Word%5D%20OR%20fanconi%20anaemia%5BText%20Word%5D%20OR%20%22fanconi%20anemia%22%5BMeSH%20Terms%5D Pub Med FA literature]
*[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=PureSearch&db=pubmed&details_term=fanconi%20anemia%5BText%20Word%5D%20OR%20fanconi%20anaemia%5BText%20Word%5D%20OR%20%22fanconi%20anemia%22%5BMeSH%20Terms%5D Pub Med FA literature]
==Grant Links==
[http://grants.nih.gov/grants/funding/submissionschedule.htm NIH Dates]


==Xenopus Resources==
[http://www.niaid.nih.gov/ncn/grants/app/default.htm Example of a well-written NIH grant application (annotated RO1)]
Collected from [http://blumberg-serv.bio.uci.edu/ Bruce Blumberg's] excellent Xine.


*[http://indigene.ibaic.u-psud.fr/article.php3?id_article=53 Xenopus Tutorial from Amy Sater]
[[Media:NIH_grants.pdf|Basic tips for NIH grant writing]]
*[http://tropmap.biology.uh.edu/ 1050-marker genetic map for X. tropicalis]
;Xine in html format, back issues
*[http://blumberg-lab.bio.uci.edu/xine/index.htm]
*[http://blumberg.bio.uci.edu/xine/index.htm]
*[http://www.xenbase.org/xine/xine.html]


;Links to useful sources of information for Xenopus (in no particular order) general interest and utility
==[[Hoatlin:Xenopus Resources| Xenopus resources]]==
*[http://www.nih.gov/science/models/xenopus/ Trans NIH Xenopus initiative]
 
*[http://tropicalis.berkeley.edu/home/ Harland lab X. tropicalis site]
==Instructions for GenBank submission of a new sequence to NCBI==
*[http://faculty.virginia.edu/xtropicalis/  Grainger lab X. tropicalis site]
[http://www.ncbi.nlm.nih.gov/BankIt/help.html#getting.html Accession number assignment]
*[http://tropmap.biology.uh.edu/ Amy Sater's X. tropicalis genetic map site]
*[https://list.mail.virginia.edu/mailman/listinfo/troplist Information on the X. tropicalis listserver]
*[http://www.xenbase.org/ Peter Vize's Xenopus über database]
*[http://www.nimr.mrc.ac.uk/devbiol/zimmerman/ Zimmerman Lab X. tropicalis website, database of mutants]


;Genomic resources
*[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database]
*[http://xgc.nci.nih.gov/  Xenopus gene collection]
*[http://informatics.gurdon.cam.ac.uk/online/xt-fl-db.html full length collection at the Gurdon Institute]
*[http://genome.jgi-psf.org/Xentr4/Xentr4.home.html JGI X. tropicalis genome site with browser and other info]
*[http://www.dkfz-heidelberg.de/molecular_embryology/axeldb.htm  AXELDB - Christof Niehrs' Xenopus database]
*[http://www.xenbase.org/ Xenbase]
==Funding Resources==
==Funding Resources==
*[http://mediswww.meds.cwru.edu/gradprog/postdocgrants.html postdoc grants]
*[http://mediswww.meds.cwru.edu/gradprog/postdocgrants.html postdoc grants]
*[http://www7.nationalacademies.org/rap/ National Academy of Sciences Fellowships]
==Lab Instructions, Orientation==
==Lab Instructions, Orientation==
Please follow these guidelines. Any questions please see Maureen:
Please follow these guidelines. Any questions please see Maureen:
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==Writing and Teaching Resources==
==Writing and Teaching Resources==
*[http://www.refdesk.com/factgram.html Facts page on grammer, usage, and style]
*[http://www.refdesk.com/factgram.html Facts page on grammer, usage, and style]
*[[Media:NIH_grants.pdf|Some basic tips for NIH grant writing]]
*[[Media:NIH_grants.pdf|Basic tips for NIH grant writing]]
*[[Media:gpw.pdf|Recommended books for paper and grant writing]]
 
'''Excellent books on writing (all are in the lab, ask Stacie for them):'''
 
The Elements of Style (by William Strunk Jr. and E.B. White)
 
Style: Ten Lessons in Clarity & Grace (by Joseph M. Williams)
 
The Oxford Dictionary of American Style and Usage (by Bryan A. Garner)
 
The Craft of Scientific Writing (by Michael Alley)
 
The Craft of Scientific presentations (by Michael Alley)
 
How to Write and Publish a Scientific Paper (Robert A. Day)
 
==Searching and Managing the Literature, Links==
*[http://openwetware.org/wiki/Searching_the_literature OWW Literature Search]
*[http://www.ariadne.ac.uk/issue51/emamy-cameron/ How to use Cite-U-Like]
**[http://www.citeulike.org/user/DNAReplication Example of citeulike on DNAReplication]
**[http://www.citeulike.org/user/Nambi Another example; Lots of gyrase papers from this citeulike user]
*[http://www.citeulike.org/group/DNAGearHeads DNAGearheads, Our new Citeulike site for DNA related articles. Let's try it]
*[http://del.icio.us/ Del.icio.us, a wiki-like social bookmaking tool]
*[http://en.wikipedia.org/wiki/Del.icio.us Wikipedia article on Del.icio.us]
*[http://blog.openwetware.org/scienceintheopen/2008/06/12/friendfeed-for-scientists-what-why-and-how/ Friend feed for Science]
==RSS feed for recent changes in Hoatlin Lab Wiki==
*http://openwetware.org/index.php?filter=Hoatlin&feed=rss&title=Special:Recentchanges
*for iPhone (yeah, baby)
**http://www.thesmespace.com/smeutils/feed/?url=http%3A%2F%2Fopenwetware.org%2Findex.php%3Ffilter%3DHoatlin%26feed%3Drss%26title%3DSpecial%3ARecentchanges#_home


==Invention and Tech Transfer==
==Invention and Tech Transfer==
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'''Note:''' PDF reprints are provided below within the context of [http://www.copyright.gov/fls/fl102.html fair use]. Please obtain copies from the publisher if appropriate.
'''Note:''' PDF reprints are provided below within the context of [http://www.copyright.gov/fls/fl102.html fair use]. Please obtain copies from the publisher if appropriate.


Noteworthy articles:
Noteworthy articles and links:


:[[Media:Aschwanden.pdf|Learning to Lead]]
:[[Media:Aschwanden.pdf|Learning to Lead]]
:[[Media:Ruttimann.pdf|It's a Postdoc's Life]]
:[[Media:Ruttimann.pdf|It's a Postdoc's Life]]
:[[Media:Watt.pdf|Women in cell biology]]
:[[Media:Watt.pdf|Women in cell biology]]
:[http://www.nationalpostdoc.org/site/c.eoJMIWOBIrH/b.1388059/k.DBBE/NPA_Home.htm Post Doc Association]
:[http://www.careersbiotech.com/ Career Opportunities in Biotechnology and Drug Development]. Book available from Cold Spring Harbor Press.


==Lunch Delivery==
==Lunch Delivery==
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*[http://www.boxlunchonline.com/order.htm boxlunches ]
*[http://www.boxlunchonline.com/order.htm boxlunches ]
*[http://www.d-dish.com/ sushi, etc]
*[http://www.d-dish.com/ dinners, sushi, etc]


==Lab Events==
==Lab Events==
It is strawberry time at Sauvie Island. This and the arrival of sunny days and our summer interns Hanna and Victor demands a lab outing. Dates?
====Berry picking time--lab outing dates??====


==Birthdays==
 
*Maureen - May 31
*Alex - June 12
*Alexis - July 12
*Victor-August 8


==Photo Extravaganza==
==Photo Extravaganza==
[[Hoatlin:Photos That Never Get Old|Photos That Never Get Old]]
[[Hoatlin:Photos That Never Get Old|Photos That Never Get Old]]


==Anouncements, Rants, FYI==
==Rotation Student Tips==
*office delivery for veggies. Anyone interested?
*Getting a key to the lab during your rotation involves a short trip to the BMB office where they will gladly loan you one for the 10 week period.
[http://www.organicstoyou.org/home/bins.html office fruit/veg delivery]
*Getting a key into the MRB building is a little trickier since they don't give those keys out. The trick is if you can get into one of the surrounding buildings you can get in the MRB. So I went to my program advisor and got a permission waiver, had it signed by a few important people, and took it to the Parking and Keys office where they programmed my ID card to open the BRB.
 
*With all the lecture notes and an endless supply of journal articles and reviews to read, printing is essential to graduate student survival.  Being able to print is not always a simple task, however.  If you're lucky you will be able to hardwire your computer to the network and simply add your printer of choice.  Those of us with laptops and no network cables need to connet to the OHSU Airport wireless network in order to add printers.  Even then it is usually frustrating, so your best bet is to call someone who knows what they're doing.
Last day of work for Hanna and Victor?
**[[Media:HoatlinRotonInfo.pdf|Roton Intro Form]]
 
**[[Media:HoatlinLabRotonEval.pdf|Roton Evaluation Form]]
*Victor's last day is probably Friday, 8/25/06.
Victor's daily contribution
*June 21, 2006: Hi!!!
*June 22, 2006: Opened a gmail account - vwong65 AT gmail DOT com
 
==Calendar==


[[Hoatlin:Calendar|Wiki Calendar test run]]
==Volcano, Tram and Nest Cams==
[http://www.kgw.com/livecams/content.html?livecams_OHSU Campus Aerial Tram Cam]


[http://www.google.com/calendar/render?cid=8vjsk5sn2kdf2gghddfg64rb40@group.calendar.google.com Lab Google Calendar]
[http://www.fs.fed.us/gpnf/volcanocams/msh/ Mount St. Helens Volcano Cam]


[http://www.google.com/calendar/embed?src=8vjsk5sn2kdf2gghddfg64rb40%40group.calendar.google.com Lab Google Calendar: The Non-edit-able version?]
[http://www2.ucsc.edu/scpbrg/falconcameraSJ.htm Peregrine Falcon Nest Cam]-they have fledged! Check out the video archives.


==Visitors==
==Visitors==

Latest revision as of 11:25, 24 June 2009

Equipped with his five senses, man explores the universe around him and calls the adventure Science. ~Edwin Powell Hubble, The Nature of Science, 1954

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Lab Meetings

Tuesdays in MRB 634, 2:30-4PM.

Keeping Frogs

Reference

Grant Links

NIH Dates

Example of a well-written NIH grant application (annotated RO1)

Basic tips for NIH grant writing

Xenopus resources

Instructions for GenBank submission of a new sequence to NCBI

Accession number assignment

Funding Resources

Lab Instructions, Orientation

Please follow these guidelines. Any questions please see Maureen:

Writing and Teaching Resources

Excellent books on writing (all are in the lab, ask Stacie for them):

The Elements of Style (by William Strunk Jr. and E.B. White)

Style: Ten Lessons in Clarity & Grace (by Joseph M. Williams)

The Oxford Dictionary of American Style and Usage (by Bryan A. Garner)

The Craft of Scientific Writing (by Michael Alley)

The Craft of Scientific presentations (by Michael Alley)

How to Write and Publish a Scientific Paper (Robert A. Day)

Searching and Managing the Literature, Links

RSS feed for recent changes in Hoatlin Lab Wiki

Invention and Tech Transfer

Career Development

Note: PDF reprints are provided below within the context of fair use. Please obtain copies from the publisher if appropriate.

Noteworthy articles and links:

Learning to Lead
It's a Postdoc's Life
Women in cell biology
Post Doc Association
Career Opportunities in Biotechnology and Drug Development. Book available from Cold Spring Harbor Press.

Lunch Delivery

Special Occasion? Lab Meeting? Project/Grant going to keep you in the lab all night? Refuse to eat at the SnakePit again?

Lab Events

Photo Extravaganza

Photos That Never Get Old

Rotation Student Tips

  • Getting a key to the lab during your rotation involves a short trip to the BMB office where they will gladly loan you one for the 10 week period.
  • Getting a key into the MRB building is a little trickier since they don't give those keys out. The trick is if you can get into one of the surrounding buildings you can get in the MRB. So I went to my program advisor and got a permission waiver, had it signed by a few important people, and took it to the Parking and Keys office where they programmed my ID card to open the BRB.
  • With all the lecture notes and an endless supply of journal articles and reviews to read, printing is essential to graduate student survival. Being able to print is not always a simple task, however. If you're lucky you will be able to hardwire your computer to the network and simply add your printer of choice. Those of us with laptops and no network cables need to connet to the OHSU Airport wireless network in order to add printers. Even then it is usually frustrating, so your best bet is to call someone who knows what they're doing.

Volcano, Tram and Nest Cams

Campus Aerial Tram Cam

Mount St. Helens Volcano Cam

Peregrine Falcon Nest Cam-they have fledged! Check out the video archives.

Visitors

Who's visiting? (got it from [Kathleen], who thanks Barry!)

<html> <a href="http://clustrmaps.com/counter/maps.php?url=http://openwetware.org/wiki/Hoatlin_Lab" id="clustrMapsLink"><img src="http://clustrmaps.com/counter/index2.php?url=http://openwetware.org/wiki/Hoatlin_Lab" border=1 alt="Locations of visitors to this page"onError="this.onError=null; this.src='http://www.meetomatic.com/images/clustrmaps-back-soon.jpg'; document.getElementById('clustrMapsLink').href='http://clustrmaps.com/'"> </a> </html>

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