Hlavacek:Publications: Difference between revisions
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*Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. [http://bioinformatics.oxfordjournals.org/ Bioinformatics] | *Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. [http://bioinformatics.oxfordjournals.org/ Bioinformatics] | ||
*Lemons NW, Hu B, Hlavacek WS (2011) Hierarchical graphs for rule-based modeling of biochemical systems. [http://www.biomedcentral.com/bmcbioinformatics BMC Bioinformatics] '''12''':45 PMID 21288338 | *Lemons NW, Hu B, Hlavacek WS (2011) Hierarchical graphs for rule-based modeling of biochemical systems. [http://www.biomedcentral.com/bmcbioinformatics BMC Bioinformatics] '''12''':45. PMID 21288338 | ||
*Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. [http://www.ploscompbiol.org PLoS Comput Biol] '''6''':e1001007 PMID 21124945 | *Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. [http://www.ploscompbiol.org PLoS Comput Biol] '''6''':e1001007. PMID 21124945 | ||
*Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. [http://scitation.aip.org/IET-SYB IET Syst Biol] '''4''', 453-466 PMID 21073243 | *Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. [http://scitation.aip.org/IET-SYB IET Syst Biol] '''4''', 453-466. PMID 21073243 | ||
==Selected publications== | ==Selected publications== | ||
Revision as of 18:39, 8 April 2011
Recent work
- Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. Bioinformatics
- Lemons NW, Hu B, Hlavacek WS (2011) Hierarchical graphs for rule-based modeling of biochemical systems. BMC Bioinformatics 12:45. PMID 21288338
- Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. PLoS Comput Biol 6:e1001007. PMID 21124945
- Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. IET Syst Biol 4, 453-466. PMID 21073243
Selected publications
- Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B (2003) The complexity of complexes in signal transduction. Biotechnol Bioeng 84, 783-794. PMID 14708119
- Wall ME, Hlavacek WS, Savageau MA (2004) Design of gene circuits: lessons from bacteria. Nat Rev Genet 5, 34-42. PMID 14708014
- Goldstein B, Faeder JR, Hlavacek WS (2004) Mathematical and computational models of immune-receptor signalling. Nat Rev Immunol 4, 445-456. PMID 15173833
- Blinov ML, Faeder JR, Goldstein B, Hlavacek WS (2004) BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. Bioinformatics 20, 3289-3291. PMID 15217809
- Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. Sci STKE 2006, re6. PMID 16849649
