Haynes Lab:Notebook/Synthetic Biology and Bioinformatics for Predictable Control of Therapeutic Gene2/2012/06/18: Difference between revisions

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* I made custom categorizers for GO Term Analysis. They are separated by biological process, molecular process, and cellular component. These are to be used anytime GO Term analysis needs to be done. Follow the directions on [http://www.animalgenome.org CATEGORIZER] and enter in the custom categorizers as .txt files.
* I made custom categorizers for GO Term Analysis. They are separated by biological process, molecular process, and cellular component. These are to be used anytime GO Term analysis needs to be done. Follow the directions on [http://www.animalgenome.org CATEGORIZER] and enter in the custom categorizers as .txt files.
* Note: In order for this analysis to work all Gene Name IDs need to be in the form of GO Accession. Go to [http://uswest.ensembl.org/biomart/martview/636d149aaa2e9bda66dcf2322dc354a1 BIOMART ENSEMBL] and follow these [http://www.biostars.org/post/show/16230/find-gene-symbolgene-name-according-to-orf-accession/ DIRECTIONS]. Make sure you check off "GO Term Accession" under the EXTERNAL category.
* Note: In order for this analysis to work all Gene Name IDs need to be in the form of GO Accession. Go to [http://uswest.ensembl.org/biomart/martview/636d149aaa2e9bda66dcf2322dc354a1 BIOMART ENSEMBL] and follow these [http://www.biostars.org/post/show/16230/find-gene-symbolgene-name-according-to-orf-accession/ DIRECTIONS]. Make sure you check off "GO Term Accession" under the EXTERNAL category.
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'''Biological Process'''
'''Biological Process'''
GO:0022610 biological adhesion  
GO:0022610 biological adhesion <br>
GO:0065007 biological regulation  
GO:0065007 biological regulation  
GO:0009758 carbohydrate utilization  
GO:0009758 carbohydrate utilization  

Revision as of 14:13, 18 June 2012

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GO Term Categorizing

  • I made custom categorizers for GO Term Analysis. They are separated by biological process, molecular process, and cellular component. These are to be used anytime GO Term analysis needs to be done. Follow the directions on CATEGORIZER and enter in the custom categorizers as .txt files.
  • Note: In order for this analysis to work all Gene Name IDs need to be in the form of GO Accession. Go to BIOMART ENSEMBL and follow these DIRECTIONS. Make sure you check off "GO Term Accession" under the EXTERNAL category.

Biological Process GO:0022610 biological adhesion
GO:0065007 biological regulation GO:0009758 carbohydrate utilization GO:0015976 carbon utilization GO:0001906 cell killing GO:0008283 cell proliferation GO:0071840 cellular component organization or biogenesis GO:0009987 cellular process GO:0016265 death GO:0032502 developmental process GO:0051234 establishment of localization GO:0040007 growth GO:0002376 immune system process GO:0051179 localization GO:0040011 locomotion GO:0008152 metabolic process GO:0051704 multi-organism process GO:0032501 multicellular organismal process GO:0048519 negative regulation of biological process GO:0019740 nitrogen utilization GO:0036166 phenotypic switching GO:0006794 phosphorus utilization GO:0043473 pigmentation GO:0048518 positive regulation of biological process GO:0050789 regulation of biological process GO:0000003 reproduction GO:0022414 reproductive process GO:0050896 response to stimulus GO:0048511 rhythmic process GO:0023052 signaling GO:0006791 sulfur utilization GO:0016032 viral reproduction

Molecular Function GO:0016209 antioxidant activity GO:0005488 binding GO:0003824 catalytic activity GO:0016247 channel regulator activity GO:0042056 chemoattractant activity GO:0045499 chemorepellent activity GO:0009055 electron carrier activity GO:0030234 enzyme regulator activity GO:0016530 metallochaperone activity GO:0060089 molecular transducer activity GO:0016015 morphogen activity GO:0001071 nucleic acid binding transcription factor activity GO:0045735 nutrient reservoir activity GO:0000988 protein binding transcription factor activity GO:0031386 protein tag GO:0004872 receptor activity GO:0030545 receptor regulator activity GO:0005198 structural molecule activity GO:0045182 translation regulator activity GO:0005215 transporter activity

Cellular Component GO:0016209 antioxidant activity GO:0005488 binding GO:0003824 catalytic activity GO:0016247 channel regulator activity GO:0042056 chemoattractant activity GO:0045499 chemorepellent activity GO:0009055 electron carrier activity GO:0030234 enzyme regulator activity GO:0016530 metallochaperone activity GO:0060089 molecular transducer activity GO:0016015 morphogen activity GO:0001071 nucleic acid binding transcription factor activity GO:0045735 nutrient reservoir activity GO:0000988 protein binding transcription factor activity GO:0031386 protein tag GO:0004872 receptor activity GO:0030545 receptor regulator activity GO:0005198 structural molecule activity GO:0045182 translation regulator activity GO:0005215 transporter activity



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