Harvard:Biophysics 101/Notebook:ZS/2007-4-30: Difference between revisions
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(New page: ==Update for this week== *This week, post-Tuesday (final project due then) =( I will compile all of the code I have written, generalize my BLAST script from last week (if Xiaodi hasn't do...) |
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*This week, post-Tuesday (final project due then) =( I will compile all of the code I have written, generalize my BLAST script from last week (if Xiaodi hasn't done that already, will consult in class Tues), and then I am free to work on other gaps the class may be having. | *This week, post-Tuesday (final project due then) =( I will compile all of the code I have written, generalize my BLAST script from last week (if Xiaodi hasn't done that already, will consult in class Tues), and then I am free to work on other gaps the class may be having. | ||
**Generalize BLAST script necessary | |||
*By Thursday I will also post the code I have written to return record information from any Entrez Gene search, which may be useful - Katie and Xiaodi I believe have some use for it in their scripts. | *By Thursday I will also post the code I have written to return record information from any Entrez Gene search, which may be useful - Katie and Xiaodi I believe have some use for it in their scripts. | ||
**Talked to Xiaodi and Katie, this is made defunct with his local server search. IF that does not go to plan, then I will write this code. | |||
*Is it worth pursuing the manual analysis of CDS data? Polyphen, which Mike is working on, should handle everything fine there | *Is it worth pursuing the manual analysis of CDS data? Polyphen, which Mike is working on, should handle everything fine there | ||
**Nope. | |||
*Be able to feed Xiaodi, if needed, the CDS region or gID which he will grab a genbank record from | |||
*Work with Denis Resmi and Cynthia to input a string of mesh terms and return an object of prevalance, CDC ID, and "dictionary name" which Tiffany et al. need | |||
Latest revision as of 08:31, 1 May 2007
Update for this week
- This week, post-Tuesday (final project due then) =( I will compile all of the code I have written, generalize my BLAST script from last week (if Xiaodi hasn't done that already, will consult in class Tues), and then I am free to work on other gaps the class may be having.
- Generalize BLAST script necessary
- By Thursday I will also post the code I have written to return record information from any Entrez Gene search, which may be useful - Katie and Xiaodi I believe have some use for it in their scripts.
- Talked to Xiaodi and Katie, this is made defunct with his local server search. IF that does not go to plan, then I will write this code.
- Is it worth pursuing the manual analysis of CDS data? Polyphen, which Mike is working on, should handle everything fine there
- Nope.
- Be able to feed Xiaodi, if needed, the CDS region or gID which he will grab a genbank record from
- Work with Denis Resmi and Cynthia to input a string of mesh terms and return an object of prevalance, CDC ID, and "dictionary name" which Tiffany et al. need
