GRNmap Testing Report: Strain Run Comparisons 2015-05-27

Code Version: "current" version from Dr. Fitzpatrick 2014-09-18

• MATLAB code
• Example Input Sheet for Estimation

MATLAB Version: 2014b (or 2014a?)

Computer on which the model was run: SEA120-02 and SEA120-03

To get the LSE & the penalty term, type the following:

Code for LSE:
GRNstruct.GRNOutput.lse_out

Code for Penalty
GRNstruct.GRNOutput.reg_out

wt alone

• Input Sheet
• Output Sheet
• Figures
• analysis.xlsx containing bar graphs
• LSE: 7.0809
• Penalty term: 0.0814

dCIN5 alone

• Input Sheet
• Output Sheet
• Figures
• analysis.xlsx containing bar graphs
• LSE: 10.6965
• Penalty term: 0.1794

dGLN3 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dHMO1 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dZAP1 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

all strains

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dCIN5

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dGLN3

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dHMO1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dZAP1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt + dCIN5 + dZAP1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt + dCIN5 + dZAP1 + dGLN3

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

Results and Discussion

• What other questions should be answered to help us further analyze the data?