GRNmap Testing Report: Strain Run Comparisons 2015-05-27

Code Version: v1.0

• MATLAB code

MATLAB Version: 2014b

Computer on which the model was run: SEA120-02 and SEA120-03

To get the LSE & the penalty term, type the following:

Code for LSE:
GRNstruct.GRNOutput.lse_out

Code for Penalty
GRNstruct.GRNOutput.reg_out

wt alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dCIN5 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dGLN3 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dHMO1 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dZAP1 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

all strains

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dCIN5

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dGLN3

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dHMO1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dZAP1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt + dCIN5 + dZAP1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt + dCIN5 + dZAP1 + dGLN3

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

Results and Discussion

• What other questions should be answered to help us further analyze the data?