GRNmap Testing Report: Strain Run Comparisons 2015-05-27

Code Version: "current" version from Dr. Fitzpatrick 2014-09-18

• MATLAB code
• Example Input Sheet for Estimation

MATLAB Version: 2014a

Computer on which the model was run: SEA120-03

• Last two test categories (wt+dCIN5+dZAP1 and wt+dCIN5+dZAP1+dGLN3) cannot be run on SEA120-03 because the computer only has MATLAB 2014b. Error displayed when Fitzpatrick's code version is run:

Undefined function 'max' for input arguments of type 'matlab.graphics.GraphicsPlaceholder'.

Error in GRNmodel (line 15) nfig = max(figHandles);

• For the first ten categories, we will upload data obtained from September 2014. For the last two categories, we will run files with a newer version of the code used in

To get the LSE & the penalty term, type the following:

Code for LSE:
GRNstruct.GRNOutput.lse_out

Code for Penalty
GRNstruct.GRNOutput.reg_out

wt alone

• Input Sheet
• Output Sheet
• Figures
• analysis.xlsx containing bar graphs
• LSE: 7.0809
• Penalty term: 0.0814

dCIN5 alone

• Input Sheet
• Output Sheet
• Figures
• analysis.xlsx containing bar graphs
• LSE: 10.6965
• Penalty term: 0.1794

dGLN3 alone

• Input Sheet
• Output Sheet
• Figures
• analysis.xlsx containing bar graphs
• LSE: 15.4498
• Penalty term: 0.0814

dHMO1 alone

• Input Sheet

hi i'm natalie

• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

dZAP1 alone

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

all strains

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dCIN5

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dGLN3

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dHMO1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt vs. dZAP1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt + dCIN5 + dZAP1

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

wt + dCIN5 + dZAP1 + dGLN3

• input.xlsx
• output.xlsx
• zipped figures
• analysis.xlsx containing bar graphs
• LSE:
• Penalty term:

Results and Discussion

• What other questions should be answered to help us further analyze the data?