GRNmap Testing Report: Strain Run Comparisons 2015-05-27: Difference between revisions

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(→‎wt alone: Inserted the files that go alone with the heading)
(2014a?)
Line 3: Line 3:
*[[Media:NW Input 21 Gene Network Sigmoid Model Estimate All Strains.xlsx| Example Input Sheet for Estimation]]
*[[Media:NW Input 21 Gene Network Sigmoid Model Estimate All Strains.xlsx| Example Input Sheet for Estimation]]


MATLAB Version: 2014b
MATLAB Version: 2014b (or 2014a?)


Computer on which the model was run: SEA120-02 and SEA120-03
Computer on which the model was run: SEA120-02 and SEA120-03

Revision as of 10:29, 27 May 2015

Code Version: v1.0

MATLAB Version: 2014b (or 2014a?)

Computer on which the model was run: SEA120-02 and SEA120-03


To get the LSE & the penalty term, type the following: 

Code for LSE:
GRNstruct.GRNOutput.lse_out

Code for Penalty
GRNstruct.GRNOutput.reg_out

wt alone

dCIN5 alone

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

dGLN3 alone

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

dHMO1 alone

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

dZAP1 alone

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

all strains

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

wt vs. dCIN5

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

wt vs. dGLN3

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

wt vs. dHMO1

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

wt vs. dZAP1

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

wt + dCIN5 + dZAP1

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

wt + dCIN5 + dZAP1 + dGLN3

  • input.xlsx
  • output.xlsx
  • zipped figures
  • analysis.xlsx containing bar graphs
  • LSE:
  • Penalty term:

Results and Discussion

  • What other questions should be answered to help us further analyze the data?
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