|Line 1:||Line 1:|
Revision as of 17:56, 20 December 2007
Stringent vs. relaxed replication
Plasmid replication control is usually controlled by balancing the levels of a positive and a negative regulator of replication. For some plasmids (pMB1/colE1 replicons) the positive regulator is an RNA and in others (e.g. pSC101) it is a protein. Plasmids with a protein positive regulator will not replicate in the abscence of protein production - stringent control (although not the same as the stringent response due to a shortage of loaded tRNAs). Plasmids with an RNA positive regulator will continue to replicate in the abscence of protein production. This is termed relaxed control. High yields of plasmid may be obtained by halting protein production (via chloroamphenicol) when the culture reaches a high density and then continuing incubation for a number of hours. This might be of practical relevance when prepping the 1 and 3 series of Synthetic Biology plasmids.--BC 19:05, 3 Sep 2005 (EDT)
|pBR322 and its derivatives||pMB1||15-20|
|pACYC and its derivatives||p15A||10-12|
|pSC101 and its derivatives||pSC101||5|
|Incompatibility group||Negative control element||Comment|
|colE1[4, 5], pMB1||RNAI||controls processing of pre-RNAII into primer. pUC is derived from pBR322 (a single mutation in the pBR322 Primer RNA and deletion of the rop gene) which is derived from a pMB1 replicon, and cannot co-reside with the colE1 incompatibility group.|
|IncFII, pT181||RNA||controls synthesis of RepA protein|
|P1, F, R6K, pSC101, p15A||iterons||sequesters RepA protein|
Replication origins in different incompatibility groups are compatible. Replication origins in the same incompatibility group are not.
Individual vector links
Note: searching for cloning vector <insert vector name> when looking for vector sequences in NCBI Entrez Nucleotide search. It helps to cut down on the number of hits.
- Bolivar F, Rodriguez RL, Greene PJ, Betlach MC, Heyneker HL, Boyer HW, Crosa JH, and Falkow S. . pmid:344137.
- Chang AC and Cohen SN. . pmid:149110.
- Cohen SN and Chang AC. . pmid:334752.
- Bazaral M and Helinski DR. . pmid:4939624.
original discovery of ColE1 plasmid
- Hershfield V, Boyer HW, Yanofsky C, Lovett MA, and Helinski DR. . pmid:4610576.
use of ColEI as a vector
- Joseph Sambrook, David W. Russell. Molecular cloning. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory, 2001. isbn:0-87969-577-3.
- Anderson ES. . pmid:4879515.
Discusses transferable drug resistance in Escherichia coli (i.e. plasmids with resistance markers)
- Cohen SN and Chang AC. . pmid:4576014.
Discusses generation of plasmids by sharing DNA, their transformation and replication.
- Cohen SN, Chang AC, Boyer HW, and Helling RB. . pmid:4594039.
Discusses use of vector to propagate other DNA fragments
- Novagen pET vector table
- table with links to properties/sequences of pET vectors
- note: slow to load