http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&feed=atom&action=history 2013-05-22T17:15:28Z Revision history for this page on the wiki MediaWiki 1.13.2 http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=618692&oldid=prev 2012-08-17T17:34:03Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 17:34, 17 August 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Source: This is reformatted from http://www.kazusa.or.jp/codon/.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Source: This is reformatted from http://www.kazusa.or.jp/codon/.</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Note that their numbers have changed so they no longer match up exactly.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Note that their numbers have changed so they no longer match up exactly. <ins class="diffchange diffchange-inline">(8/15/2012)</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 76:</td> <td colspan="2" class="diff-lineno">Line 76:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Tryptophan]]||TGG||24553.00||15.31||1.00</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Tryptophan]]||TGG||24553.00||15.31||1.00</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|Stop||TGA||1448.00||0.90||0.29</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Cysteine]]||TGT||8306.00||5.18||0.45</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Cysteine]]||TGT||8306.00||5.18||0.45</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 86:</td> <td colspan="2" class="diff-lineno">Line 84:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|Stop||TAA||3244.00||2.02||0.64</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|Stop||TAA||3244.00||2.02||0.64</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|Stop||TGA||1448.00||0.90||0.29</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Tyrosine]]||TAT||26180.00||16.32||0.57</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Tyrosine]]||TAT||26180.00||16.32||0.57</div></td></tr> <!-- diff generator: internal 2013-05-22 17:15:28 --> </table>

Janet B. Matsen http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=618436&oldid=prev 2012-08-15T15:40:42Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:40, 15 August 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">Escherichia coli K12 [gbbct]</del>: <del class="diffchange diffchange-inline">5054 CDS's (1603901 codons)</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Source</ins>: <ins class="diffchange diffchange-inline">This is reformatted from http://www.kazusa.or.jp/codon/.</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Note that their numbers have changed so they no longer match up exactly.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">* What this the source of this data?&nbsp; Please state for your 14,000 page visitors!</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{| class=sortable border=1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{| class=sortable border=1</div></td></tr> <!-- diff generator: internal 2013-05-22 17:15:28 --> </table>

Austin J. Che http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=618420&oldid=prev 2012-08-15T13:49:52Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 13:49, 15 August 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 42:</td> <td colspan="2" class="diff-lineno">Line 42:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||AGA||3291.00||2.05||0.04</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||AGA||3291.00||2.05||0.04</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Arginine]]||CGG||8631.00||5.38||0.10</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">|</ins>[[Arginine]]||CGG||8631.00||5.38||0.10</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||CGA||5668.00||3.53||0.06</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||CGA||5668.00||3.53||0.06</div></td></tr> <!-- diff generator: internal 2013-05-22 17:15:28 --> </table>

Janet B. Matsen http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=618419&oldid=prev 2012-08-15T13:41:14Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 13:41, 15 August 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 41:</td> <td colspan="2" class="diff-lineno">Line 41:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||AGA||3291.00||2.05||0.04</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||AGA||3291.00||2.05||0.04</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[Arginine]]||CGG||8631.00||5.38||0.10</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGA||5668.00||3.53||0.06</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGT||33711.00||21.02||0.38</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGC||35311.00||22.02||0.40 </ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Lysine]]||AAG||16370.00||10.21||0.23</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Lysine]]||AAG||16370.00||10.21||0.23</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 89:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Tyrosine]]||TAC||19675.00||12.27||0.43 &nbsp;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Tyrosine]]||TAC||19675.00||12.27||0.43 &nbsp;</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Leucine]]||TTG||22000.00||13.72||0.13</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Leucine]]||TTA||22279.00||13.89||0.13</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Phenylalanine]]||TTT||35930.00||22.40||0.57</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Phenylalanine]]||TTT||35930.00||22.40||0.57</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 101:</td> <td colspan="2" class="diff-lineno">Line 105:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Serine]]||TCC||13783.00||8.59||0.15 &nbsp;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Serine]]||TCC||13783.00||8.59||0.15 &nbsp;</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGG||8631.00||5.38||0.10</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGA||5668.00||3.53||0.06</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGT||33711.00||21.02||0.38</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Arginine]]||CGC||35311.00||22.02||0.40 </del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Glutamine]]||CAG||46256.00||28.84||0.65</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Glutamine]]||CAG||46256.00||28.84||0.65</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 117:</td> <td colspan="2" class="diff-lineno">Line 113:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Histadine]]||CAC||15595.00||9.72||0.43 &nbsp;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Histadine]]||CAC||15595.00||9.72||0.43 &nbsp;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Leucine]]||TTG||22000.00||13.72||0.13</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Leucine]]||TTA||22279.00||13.89||0.13</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Leucine]]||CTG||84714.00||52.82||0.50</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Leucine]]||CTG||84714.00||52.82||0.50</div></td></tr> <!-- diff generator: internal 2013-05-22 17:15:28 --> </table>

Janet B. Matsen http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=618418&oldid=prev 2012-08-15T13:31:05Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 13:31, 15 August 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* What this the source of this data?&nbsp; Please state for your 14,000 page visitors!</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{| class=sortable border=1</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{| class=sortable border=1</div></td></tr> <!-- diff generator: internal 2013-05-22 17:15:28 --> </table>

Janet B. Matsen http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=618414&oldid=prev 2012-08-15T13:27:25Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr valign='top'> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 13:27, 15 August 2012</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 39:</td> <td colspan="2" class="diff-lineno">Line 39:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||AGA||3291.00||2.05||0.04</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Arginine]]||AGA||3291.00||2.05||0.04</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Serine]]||AGT||13976.00||8.71||0.15</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|-</del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">|[[Serine]]||AGC||25716.00||16.03||0.28 </del></div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Lysine]]||AAG||16370.00||10.21||0.23</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Lysine]]||AAG||16370.00||10.21||0.23</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 91:</td> <td colspan="2" class="diff-lineno">Line 87:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Phenylalanine]]||TTC||26609.00||16.59||0.43 &nbsp;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Phenylalanine]]||TTC||26609.00||16.59||0.43 &nbsp;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Serine]]||AGT||13976.00||8.71||0.15</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|-</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">|[[Serine]]||AGC||25716.00||16.03||0.28 </ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|-</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Serine]]||TCG||14305.00||8.92||0.15</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>|[[Serine]]||TCG||14305.00||8.92||0.15</div></td></tr> <!-- diff generator: internal 2013-05-22 17:15:28 --> </table>

Janet B. Matsen http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=148918&oldid=prev 2007-09-07T22:14:34Z

<p></p> <a href="http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&amp;diff=148918&amp;oldid=148911">Show changes</a>

Austin J. Che http://openwetware.org/index.php?title=Escherichia_coli/Codon_usage&diff=148911&oldid=prev 2007-09-07T21:57:38Z

<p>New page: Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons) {| class=sortable border=1 !Amino Acid !Codon !Total number !#/1000 !Fraction |- |Gly |GGG |17628.00 |10.99 |0.15 |- |Gly |GGA |1...</p> <p><b>New page</b></p><div>Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)<br /> <br /> {| class=sortable border=1<br /> !Amino Acid<br /> !Codon<br /> !Total number<br /> !#/1000<br /> !Fraction<br /> |-<br /> |Gly<br /> |GGG<br /> |17628.00<br /> |10.99<br /> |0.15<br /> |-<br /> |Gly<br /> |GGA<br /> |12696.00<br /> |7.92<br /> |0.11<br /> |-<br /> |Gly<br /> |GGT<br /> |39862.00<br /> |24.85<br /> |0.34<br /> |-<br /> |Gly<br /> |GGC<br /> |47212.00<br /> |29.44<br /> |0.40<br /> |-<br /> |Glu<br /> |GAG<br /> |28529.00<br /> |17.79<br /> |0.31<br /> |-<br /> |Glu<br /> |GAA<br /> |63484.00<br /> |39.58<br /> |0.69<br /> |-<br /> |Asp<br /> |GAT<br /> |51670.00<br /> |32.22<br /> |0.63<br /> |-<br /> |Asp<br /> |GAC<br /> |30559.00<br /> |19.05<br /> |0.37 <br /> |-<br /> |Val<br /> |GTG<br /> |42097.00<br /> |26.25<br /> |0.37<br /> |-<br /> |Val<br /> |GTA<br /> |17443.00<br /> |10.88<br /> |0.15<br /> |-<br /> |Val<br /> |GTT<br /> |29487.00<br /> |18.38<br /> |0.26<br /> |-<br /> |Val<br /> |GTC<br /> |24406.00<br /> |15.22<br /> |0.22 <br /> |-<br /> |Ala<br /> |GCG<br /> |53984.00<br /> |33.66<br /> |0.36<br /> |-<br /> |Ala<br /> |GCA<br /> |32529.00<br /> |20.28<br /> |0.21<br /> |-<br /> |Ala<br /> |GCT<br /> |24609.00<br /> |15.34<br /> |0.16<br /> |-<br /> |Ala<br /> |GCC<br /> |40914.00<br /> |25.51<br /> |0.27 <br /> |-<br /> |Arg<br /> |AGG<br /> |1949.00<br /> |1.22<br /> |0.02<br /> |-<br /> |Arg<br /> |AGA<br /> |3291.00<br /> |2.05<br /> |0.04<br /> |-<br /> |Ser<br /> |AGT<br /> |13976.00<br /> |8.71<br /> |0.15<br /> |-<br /> |Ser<br /> |AGC<br /> |25716.00<br /> |16.03<br /> |0.28 <br /> |-<br /> |Lys<br /> |AAG<br /> |16370.00<br /> |10.21<br /> |0.23<br /> |-<br /> |Lys<br /> |AAA<br /> |53920.00<br /> |33.62<br /> |0.77<br /> |-<br /> |Asn<br /> |AAT<br /> |28256.00<br /> |17.62<br /> |0.45<br /> |-<br /> |Asn<br /> |AAC<br /> |34752.00<br /> |21.67<br /> |0.55 <br /> |-<br /> |Met<br /> |ATG<br /> |44539.00<br /> |27.77<br /> |1.00<br /> |-<br /> |Ile<br /> |ATA<br /> |6866.00<br /> |4.28<br /> |0.07<br /> |-<br /> |Ile<br /> |ATT<br /> |48766.00<br /> |30.40<br /> |0.51<br /> |-<br /> |Ile<br /> |ATC<br /> |40097.00<br /> |25.00<br /> |0.42 <br /> |-<br /> |Thr<br /> |ACG<br /> |23056.00<br /> |14.37<br /> |0.27<br /> |-<br /> |Thr<br /> |ACA<br /> |11267.00<br /> |7.02<br /> |0.13<br /> |-<br /> |Thr<br /> |ACT<br /> |14303.00<br /> |8.92<br /> |0.17<br /> |-<br /> |Thr<br /> |ACC<br /> |37495.00<br /> |23.38<br /> |0.44 <br /> |-<br /> |Trp<br /> |TGG<br /> |24553.00<br /> |15.31<br /> |1.00<br /> |-<br /> |End<br /> |TGA<br /> |1448.00<br /> |0.90<br /> |0.29<br /> |-<br /> |Cys<br /> |TGT<br /> |8306.00<br /> |5.18<br /> |0.45<br /> |-<br /> |Cys<br /> |TGC<br /> |10330.00<br /> |6.44<br /> |0.55 <br /> |-<br /> |End<br /> |TAG<br /> |365.00<br /> |0.23<br /> |0.07<br /> |-<br /> |End<br /> |TAA<br /> |3244.00<br /> |2.02<br /> |0.64<br /> |-<br /> |Tyr<br /> |TAT<br /> |26180.00<br /> |16.32<br /> |0.57<br /> |-<br /> |Tyr<br /> |TAC<br /> |19675.00<br /> |12.27<br /> |0.43 <br /> |-<br /> |Leu<br /> |TTG<br /> |22000.00<br /> |13.72<br /> |0.13<br /> |-<br /> |Leu<br /> |TTA<br /> |22279.00<br /> |13.89<br /> |0.13<br /> |-<br /> |Phe<br /> |TTT<br /> |35930.00<br /> |22.40<br /> |0.57<br /> |-<br /> |Phe<br /> |TTC<br /> |26609.00<br /> |16.59<br /> |0.43 <br /> |-<br /> |Ser<br /> |TCG<br /> |14305.00<br /> |8.92<br /> |0.15<br /> |-<br /> |Ser<br /> |TCA<br /> |11438.00<br /> |7.13<br /> |0.12<br /> |-<br /> |Ser<br /> |TCT<br /> |13633.00<br /> |8.50<br /> |0.15<br /> |-<br /> |Ser<br /> |TCC<br /> |13783.00<br /> |8.59<br /> |0.15 <br /> |-<br /> |Arg<br /> |CGG<br /> |8631.00<br /> |5.38<br /> |0.10<br /> |-<br /> |Arg<br /> |CGA<br /> |5668.00<br /> |3.53<br /> |0.06<br /> |-<br /> |Arg<br /> |CGT<br /> |33711.00<br /> |21.02<br /> |0.38<br /> |-<br /> |Arg<br /> |CGC<br /> |35311.00<br /> |22.02<br /> |0.40 <br /> |-<br /> |Gln<br /> |CAG<br /> |46256.00<br /> |28.84<br /> |0.65<br /> |-<br /> |Gln<br /> |CAA<br /> |24787.00<br /> |15.45<br /> |0.35<br /> |-<br /> |His<br /> |CAT<br /> |20686.00<br /> |12.90<br /> |0.57<br /> |-<br /> |His<br /> |CAC<br /> |15595.00<br /> |9.72<br /> |0.43 <br /> |-<br /> |Leu<br /> |CTG<br /> |84714.00<br /> |52.82<br /> |0.50<br /> |-<br /> |Leu<br /> |CTA<br /> |6182.00<br /> |3.85<br /> |0.04<br /> |-<br /> |Leu<br /> |CTT<br /> |17707.00<br /> |11.04<br /> |0.10<br /> |-<br /> |Leu<br /> |CTC<br /> |17715.00<br /> |11.04<br /> |0.10 <br /> |-<br /> |Pro<br /> |CCG<br /> |37316.00<br /> |23.27<br /> |0.52<br /> |-<br /> |Pro<br /> |CCA<br /> |13664.00<br /> |8.52<br /> |0.19<br /> |-<br /> |Pro<br /> |CCT<br /> |11291.00<br /> |7.04<br /> |0.16<br /> |-<br /> |Pro<br /> |CCC<br /> |8861.00<br /> |5.52<br /> |0.12<br /> |}<br /> <br /> [[Category:Escherichia coli]]</div>

Austin J. Che