Escherichia coli/Codon usage: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
(New page: Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons) {| class=sortable border=1 !Amino Acid !Codon !Total number !#/1000 !Fraction |- |Gly |GGG |17628.00 |10.99 |0.15 |- |Gly |GGA |1...) |
No edit summary |
||
Line 2: | Line 2: | ||
{| class=sortable border=1 | {| class=sortable border=1 | ||
!Amino Acid | !Amino Acid!!Codon!!Total number!!#/1000!!Fraction | ||
!Codon | |||
!Total number | |||
!#/1000 | |||
!Fraction | |||
|- | |- | ||
| | |[[Glycine]]||GGG||17628.00||10.99||0.15 | ||
|GGG | |||
|17628.00 | |||
|10.99 | |||
|0.15 | |||
|- | |- | ||
| | |[[Glycine]]||GGA||12696.00||7.92||0.11 | ||
|GGA | |||
|12696.00 | |||
|7.92 | |||
|0.11 | |||
|- | |- | ||
| | |[[Glycine]]||GGT||39862.00||24.85||0.34 | ||
|GGT | |||
|39862.00 | |||
|24.85 | |||
|0.34 | |||
|- | |- | ||
| | |[[Glycine]]||GGC||47212.00||29.44||0.40 | ||
|GGC | |||
|47212.00 | |||
|29.44 | |||
|0.40 | |||
|- | |- | ||
| | |[[Glutamate]]||GAG||28529.00||17.79||0.31 | ||
|GAG | |||
|28529.00 | |||
|17.79 | |||
|0.31 | |||
|- | |- | ||
| | |[[Glutamate]]||GAA||63484.00||39.58||0.69 | ||
|GAA | |||
|63484.00 | |||
|39.58 | |||
|0.69 | |||
|- | |- | ||
| | |[[Aspartate]]||GAT||51670.00||32.22||0.63 | ||
|GAT | |||
|51670.00 | |||
|32.22 | |||
|0.63 | |||
|- | |- | ||
| | |[[Aspartate]]||GAC||30559.00||19.05||0.37 | ||
|GAC | |||
|30559.00 | |||
|19.05 | |||
|0.37 | |||
|- | |- | ||
| | |[[Valine]]||GTG||42097.00||26.25||0.37 | ||
|GTG | |||
|42097.00 | |||
|26.25 | |||
|0.37 | |||
|- | |- | ||
| | |[[Valine]]||GTA||17443.00||10.88||0.15 | ||
|GTA | |||
|17443.00 | |||
|10.88 | |||
|0.15 | |||
|- | |- | ||
| | |[[Valine]]||GTT||29487.00||18.38||0.26 | ||
|GTT | |||
|29487.00 | |||
|18.38 | |||
|0.26 | |||
|- | |- | ||
| | |[[Valine]]||GTC||24406.00||15.22||0.22 | ||
|GTC | |||
|24406.00 | |||
|15.22 | |||
|0.22 | |||
|- | |- | ||
| | |[[Alanine]]||GCG||53984.00||33.66||0.36 | ||
|GCG | |||
|53984.00 | |||
|33.66 | |||
|0.36 | |||
|- | |- | ||
| | |[[Alanine]]||GCA||32529.00||20.28||0.21 | ||
|GCA | |||
|32529.00 | |||
|20.28 | |||
|0.21 | |||
|- | |- | ||
| | |[[Alanine]]||GCT||24609.00||15.34||0.16 | ||
|GCT | |||
|24609.00 | |||
|15.34 | |||
|0.16 | |||
|- | |- | ||
| | |[[Alanine]]||GCC||40914.00||25.51||0.27 | ||
|GCC | |||
|40914.00 | |||
|25.51 | |||
|0.27 | |||
|- | |- | ||
| | |[[Arginine]]||AGG||1949.00||1.22||0.02 | ||
|AGG | |||
|1949.00 | |||
|1.22 | |||
|0.02 | |||
|- | |- | ||
| | |[[Arginine]]||AGA||3291.00||2.05||0.04 | ||
|AGA | |||
|3291.00 | |||
|2.05 | |||
|0.04 | |||
|- | |- | ||
| | |[[Serine]]||AGT||13976.00||8.71||0.15 | ||
|AGT | |||
|13976.00 | |||
|8.71 | |||
|0.15 | |||
|- | |- | ||
| | |[[Serine]]||AGC||25716.00||16.03||0.28 | ||
|AGC | |||
|25716.00 | |||
|16.03 | |||
|0.28 | |||
|- | |- | ||
| | |[[Lysine]]||AAG||16370.00||10.21||0.23 | ||
|AAG | |||
|16370.00 | |||
|10.21 | |||
|0.23 | |||
|- | |- | ||
| | |[[Lysine]]||AAA||53920.00||33.62||0.77 | ||
|AAA | |||
|53920.00 | |||
|33.62 | |||
|0.77 | |||
|- | |- | ||
| | |[[Asparagine]]||AAT||28256.00||17.62||0.45 | ||
|AAT | |||
|28256.00 | |||
|17.62 | |||
|0.45 | |||
|- | |- | ||
| | |[[Asparagine]]||AAC||34752.00||21.67||0.55 | ||
|AAC | |||
|34752.00 | |||
|21.67 | |||
|0.55 | |||
|- | |- | ||
| | |[[Methionine]]||ATG||44539.00||27.77||1.00 | ||
|ATG | |||
|44539.00 | |||
|27.77 | |||
|1.00 | |||
|- | |- | ||
| | |[[Isoleucine]]||ATA||6866.00||4.28||0.07 | ||
|ATA | |||
|6866.00 | |||
|4.28 | |||
|0.07 | |||
|- | |- | ||
| | |[[Isoleucine]]||ATT||48766.00||30.40||0.51 | ||
|ATT | |||
|48766.00 | |||
|30.40 | |||
|0.51 | |||
|- | |- | ||
| | |[[Isoleucine]]||ATC||40097.00||25.00||0.42 | ||
|ATC | |||
|40097.00 | |||
|25.00 | |||
|0.42 | |||
|- | |- | ||
| | |[[Threonine]]||ACG||23056.00||14.37||0.27 | ||
|ACG | |||
|23056.00 | |||
|14.37 | |||
|0.27 | |||
|- | |- | ||
| | |[[Threonine]]||ACA||11267.00||7.02||0.13 | ||
|ACA | |||
|11267.00 | |||
|7.02 | |||
|0.13 | |||
|- | |- | ||
| | |[[Threonine]]||ACT||14303.00||8.92||0.17 | ||
|ACT | |||
|14303.00 | |||
|8.92 | |||
|0.17 | |||
|- | |- | ||
| | |[[Threonine]]||ACC||37495.00||23.38||0.44 | ||
|ACC | |||
|37495.00 | |||
|23.38 | |||
|0.44 | |||
|- | |- | ||
| | |[[Tryptophan]]||TGG||24553.00||15.31||1.00 | ||
|TGG | |||
|24553.00 | |||
|15.31 | |||
|1.00 | |||
|- | |- | ||
| | |Stop||TGA||1448.00||0.90||0.29 | ||
|TGA | |||
|1448.00 | |||
|0.90 | |||
|0.29 | |||
|- | |- | ||
| | |[[Cysteine]]||TGT||8306.00||5.18||0.45 | ||
|TGT | |||
|8306.00 | |||
|5.18 | |||
|0.45 | |||
|- | |- | ||
| | |[[Cysteine]]||TGC||10330.00||6.44||0.55 | ||
|TGC | |||
|10330.00 | |||
|6.44 | |||
|0.55 | |||
|- | |- | ||
| | |Stop||TAG||365.00||0.23||0.07 | ||
|TAG | |||
|365.00 | |||
|0.23 | |||
|0.07 | |||
|- | |- | ||
| | |Stop||TAA||3244.00||2.02||0.64 | ||
|TAA | |||
|3244.00 | |||
|2.02 | |||
|0.64 | |||
|- | |- | ||
| | |[[Tyrosine]]||TAT||26180.00||16.32||0.57 | ||
|TAT | |||
|26180.00 | |||
|16.32 | |||
|0.57 | |||
|- | |- | ||
| | |[[Tyrosine]]||TAC||19675.00||12.27||0.43 | ||
|TAC | |||
|19675.00 | |||
|12.27 | |||
|0.43 | |||
|- | |- | ||
| | |[[Leucine]]||TTG||22000.00||13.72||0.13 | ||
|TTG | |||
|22000.00 | |||
|13.72 | |||
|0.13 | |||
|- | |- | ||
| | |[[Leucine]]||TTA||22279.00||13.89||0.13 | ||
|TTA | |||
|22279.00 | |||
|13.89 | |||
|0.13 | |||
|- | |- | ||
| | |[[Phenylalanine]]||TTT||35930.00||22.40||0.57 | ||
|TTT | |||
|35930.00 | |||
|22.40 | |||
|0.57 | |||
|- | |- | ||
| | |[[Phenylalanine]]||TTC||26609.00||16.59||0.43 | ||
|TTC | |||
|26609.00 | |||
|16.59 | |||
|0.43 | |||
|- | |- | ||
| | |[[Serine]]||TCG||14305.00||8.92||0.15 | ||
|TCG | |||
|14305.00 | |||
|8.92 | |||
|0.15 | |||
|- | |- | ||
| | |[[Serine]]||TCA||11438.00||7.13||0.12 | ||
|TCA | |||
|11438.00 | |||
|7.13 | |||
|0.12 | |||
|- | |- | ||
| | |[[Serine]]||TCT||13633.00||8.50||0.15 | ||
|TCT | |||
|13633.00 | |||
|8.50 | |||
|0.15 | |||
|- | |- | ||
| | |[[Serine]]||TCC||13783.00||8.59||0.15 | ||
|TCC | |||
|13783.00 | |||
|8.59 | |||
|0.15 | |||
|- | |- | ||
| | |[[Arginine]]||CGG||8631.00||5.38||0.10 | ||
|CGG | |||
|8631.00 | |||
|5.38 | |||
|0.10 | |||
|- | |- | ||
| | |[[Arginine]]||CGA||5668.00||3.53||0.06 | ||
|CGA | |||
|5668.00 | |||
|3.53 | |||
|0.06 | |||
|- | |- | ||
| | |[[Arginine]]||CGT||33711.00||21.02||0.38 | ||
|CGT | |||
|33711.00 | |||
|21.02 | |||
|0.38 | |||
|- | |- | ||
| | |[[Arginine]]||CGC||35311.00||22.02||0.40 | ||
|CGC | |||
|35311.00 | |||
|22.02 | |||
|0.40 | |||
|- | |- | ||
| | |[[Glutamine]]||CAG||46256.00||28.84||0.65 | ||
|CAG | |||
|46256.00 | |||
|28.84 | |||
|0.65 | |||
|- | |- | ||
| | |[[Glutamine]]||CAA||24787.00||15.45||0.35 | ||
|CAA | |||
|24787.00 | |||
|15.45 | |||
|0.35 | |||
|- | |- | ||
| | |[[Histadine]]||CAT||20686.00||12.90||0.57 | ||
|CAT | |||
|20686.00 | |||
|12.90 | |||
|0.57 | |||
|- | |- | ||
| | |[[Histadine]]||CAC||15595.00||9.72||0.43 | ||
|CAC | |||
|15595.00 | |||
|9.72 | |||
|0.43 | |||
|- | |- | ||
| | |[[Leucine]]||CTG||84714.00||52.82||0.50 | ||
|CTG | |||
|84714.00 | |||
|52.82 | |||
|0.50 | |||
|- | |- | ||
| | |[[Leucine]]||CTA||6182.00||3.85||0.04 | ||
|CTA | |||
|6182.00 | |||
|3.85 | |||
|0.04 | |||
|- | |- | ||
| | |[[Leucine]]||CTT||17707.00||11.04||0.10 | ||
|CTT | |||
|17707.00 | |||
|11.04 | |||
|0.10 | |||
|- | |- | ||
| | |[[Leucine]]||CTC||17715.00||11.04||0.10 | ||
|CTC | |||
|17715.00 | |||
|11.04 | |||
|0.10 | |||
|- | |- | ||
| | |[[Proline]]||CCG||37316.00||23.27||0.52 | ||
|CCG | |||
|37316.00 | |||
|23.27 | |||
|0.52 | |||
|- | |- | ||
| | |[[Proline]]||CCA||13664.00||8.52||0.19 | ||
|CCA | |||
|13664.00 | |||
|8.52 | |||
|0.19 | |||
|- | |- | ||
| | |[[Proline]]||CCT||11291.00||7.04||0.16 | ||
|CCT | |||
|11291.00 | |||
|7.04 | |||
|0.16 | |||
|- | |- | ||
| | |[[Proline]]||CCC||8861.00||5.52||0.12 | ||
|CCC | |||
|8861.00 | |||
|5.52 | |||
|0.12 | |||
|} | |} | ||
[[Category:Escherichia coli]] | [[Category:Escherichia coli]] |
Revision as of 15:14, 7 September 2007
Escherichia coli K12 [gbbct]: 5054 CDS's (1603901 codons)
Amino Acid | Codon | Total number | #/1000 | Fraction |
---|---|---|---|---|
Glycine | GGG | 17628.00 | 10.99 | 0.15 |
Glycine | GGA | 12696.00 | 7.92 | 0.11 |
Glycine | GGT | 39862.00 | 24.85 | 0.34 |
Glycine | GGC | 47212.00 | 29.44 | 0.40 |
Glutamate | GAG | 28529.00 | 17.79 | 0.31 |
Glutamate | GAA | 63484.00 | 39.58 | 0.69 |
Aspartate | GAT | 51670.00 | 32.22 | 0.63 |
Aspartate | GAC | 30559.00 | 19.05 | 0.37 |
Valine | GTG | 42097.00 | 26.25 | 0.37 |
Valine | GTA | 17443.00 | 10.88 | 0.15 |
Valine | GTT | 29487.00 | 18.38 | 0.26 |
Valine | GTC | 24406.00 | 15.22 | 0.22 |
Alanine | GCG | 53984.00 | 33.66 | 0.36 |
Alanine | GCA | 32529.00 | 20.28 | 0.21 |
Alanine | GCT | 24609.00 | 15.34 | 0.16 |
Alanine | GCC | 40914.00 | 25.51 | 0.27 |
Arginine | AGG | 1949.00 | 1.22 | 0.02 |
Arginine | AGA | 3291.00 | 2.05 | 0.04 |
Serine | AGT | 13976.00 | 8.71 | 0.15 |
Serine | AGC | 25716.00 | 16.03 | 0.28 |
Lysine | AAG | 16370.00 | 10.21 | 0.23 |
Lysine | AAA | 53920.00 | 33.62 | 0.77 |
Asparagine | AAT | 28256.00 | 17.62 | 0.45 |
Asparagine | AAC | 34752.00 | 21.67 | 0.55 |
Methionine | ATG | 44539.00 | 27.77 | 1.00 |
Isoleucine | ATA | 6866.00 | 4.28 | 0.07 |
Isoleucine | ATT | 48766.00 | 30.40 | 0.51 |
Isoleucine | ATC | 40097.00 | 25.00 | 0.42 |
Threonine | ACG | 23056.00 | 14.37 | 0.27 |
Threonine | ACA | 11267.00 | 7.02 | 0.13 |
Threonine | ACT | 14303.00 | 8.92 | 0.17 |
Threonine | ACC | 37495.00 | 23.38 | 0.44 |
Tryptophan | TGG | 24553.00 | 15.31 | 1.00 |
Stop | TGA | 1448.00 | 0.90 | 0.29 |
Cysteine | TGT | 8306.00 | 5.18 | 0.45 |
Cysteine | TGC | 10330.00 | 6.44 | 0.55 |
Stop | TAG | 365.00 | 0.23 | 0.07 |
Stop | TAA | 3244.00 | 2.02 | 0.64 |
Tyrosine | TAT | 26180.00 | 16.32 | 0.57 |
Tyrosine | TAC | 19675.00 | 12.27 | 0.43 |
Leucine | TTG | 22000.00 | 13.72 | 0.13 |
Leucine | TTA | 22279.00 | 13.89 | 0.13 |
Phenylalanine | TTT | 35930.00 | 22.40 | 0.57 |
Phenylalanine | TTC | 26609.00 | 16.59 | 0.43 |
Serine | TCG | 14305.00 | 8.92 | 0.15 |
Serine | TCA | 11438.00 | 7.13 | 0.12 |
Serine | TCT | 13633.00 | 8.50 | 0.15 |
Serine | TCC | 13783.00 | 8.59 | 0.15 |
Arginine | CGG | 8631.00 | 5.38 | 0.10 |
Arginine | CGA | 5668.00 | 3.53 | 0.06 |
Arginine | CGT | 33711.00 | 21.02 | 0.38 |
Arginine | CGC | 35311.00 | 22.02 | 0.40 |
Glutamine | CAG | 46256.00 | 28.84 | 0.65 |
Glutamine | CAA | 24787.00 | 15.45 | 0.35 |
Histadine | CAT | 20686.00 | 12.90 | 0.57 |
Histadine | CAC | 15595.00 | 9.72 | 0.43 |
Leucine | CTG | 84714.00 | 52.82 | 0.50 |
Leucine | CTA | 6182.00 | 3.85 | 0.04 |
Leucine | CTT | 17707.00 | 11.04 | 0.10 |
Leucine | CTC | 17715.00 | 11.04 | 0.10 |
Proline | CCG | 37316.00 | 23.27 | 0.52 |
Proline | CCA | 13664.00 | 8.52 | 0.19 |
Proline | CCT | 11291.00 | 7.04 | 0.16 |
Proline | CCC | 8861.00 | 5.52 | 0.12 |