Endy:Research: Difference between revisions

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==Synthetic Biology==
===Genetic Data Storage===
'''Our goal is to make biology ''easy'' to engineer.''' Students in the lab pursue independent research projects of their own choosing that fall within this broad agendaReading their dissertations and research papers is a great way to learn about the sort of work that the lab has been able to support, and includes good background and introductory materials as well as glimpses of future ideas and directions. You'll find that the lab has a strong interest in foundational technology development; we are also interested in the application of biological technologies.  If you are looking for a place to work on a new (or old) research idea that's relevant to synthetic biology then we would very much like to hear from you.
We are focused on the development of engineered DNA systems that are capable of data storage inside living cellsOur [http://blogs.scientificamerican.com/observations/2012/05/21/scientists-engineer-rewriteable-digital-data-storage-in-the-dna-of-living-bacteria/ recent work] has focused on non-volatile recombinase addressable data (RAD) storage engineered from serine recombinases that target reversibly-invertible chromosomal data registers. We are interested in scaling genetically-encoded data systems from from a few bits to a few bytes.


==PhD Students==
===Engineering Biology===
*Jason Kelly (2008)
Our overall long term goal is to help make biology easy to engineer, an area of research sometimes known as synthetic biology.  In particular, we adapt ideas from metrology that help enable the distributed measurement and representation of in vivo molecular activities. We also develop genetic layout architectures that help establish reliably reusable standard biological parts supporting abstraction of biological functions.
*Barry Canton (2008)
*Samantha Sutton (2008)
*Ty Thomson (2008)
*Reshma Shetty (2008, w/ Tom Knight)
*Sri Kosuri (2007)
**Simulation, models, and refactoring of bacteriophage T7 gene expression ([http://dspace.mit.edu/handle/1721.1/39912 Dissertation])


==MS Students==
===Research Background & Context, Additional Materials===
*Alex Mallet
The many and diverse dissertations from past students in the lab, their peer-reviewed published articles, and our written perspectives and other published projects are all [[Endy:Reprints | freely available online]].  We hope that students who are interested in exploring and taking forward their own research projects in the lab will be informed and inspired by the curiosity and independence of past student's work.  We hope that others who are interested in understanding, contributing to, or constructively criticizing the lab's work make full use of our published record.
*Jeff Gritton
 
==Undergraduate Students==
*iGEM 2008
*iGEM 2007
*iGEM 2006
*Synthetic Biology Competition 2005
*IAP 2004
*IAP 2003
 
==Current Projects (partial listing)==
 
[[Engineering the Host/System Interface|Engineering the Chassis/System Interface]] - [[Barry Canton]]
 
[[Library-based Construction]] - [[Jason Kelly]] & [[Josh Michener]]
 
[[Rebuilding T7]] - [[Sri Kosuri]]
 
[[Receiver Definition]] - [[Ania Labno]] & [[Barry Canton]]
 
[[SortoStat]] - [[Jason Kelly]] & [[Bryan Hernandez]]
 
[[TABASCO]] - [[Sri Kosuri]]
 
[[Time-Dependent Analysis of Signaling Pathways]] - [[Ty Thomson]]
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Revision as of 15:37, 21 May 2012

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Genetic Data Storage

We are focused on the development of engineered DNA systems that are capable of data storage inside living cells. Our recent work has focused on non-volatile recombinase addressable data (RAD) storage engineered from serine recombinases that target reversibly-invertible chromosomal data registers. We are interested in scaling genetically-encoded data systems from from a few bits to a few bytes.

Engineering Biology

Our overall long term goal is to help make biology easy to engineer, an area of research sometimes known as synthetic biology. In particular, we adapt ideas from metrology that help enable the distributed measurement and representation of in vivo molecular activities. We also develop genetic layout architectures that help establish reliably reusable standard biological parts supporting abstraction of biological functions.

Research Background & Context, Additional Materials

The many and diverse dissertations from past students in the lab, their peer-reviewed published articles, and our written perspectives and other published projects are all freely available online. We hope that students who are interested in exploring and taking forward their own research projects in the lab will be informed and inspired by the curiosity and independence of past student's work. We hope that others who are interested in understanding, contributing to, or constructively criticizing the lab's work make full use of our published record.