Endy:PiP
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This page is for keeping track of the status of papers in the Endy Lab writing queue.
WRITING
- Barry #1: A virtual machine for synthetic biology, or equivalent
- Authors: Barry, Drew
- Status: BC to discuss w/ various folks and propose scope of remaining work
- Goal: Submit before the end of August 2008
- Jason #1: Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites
- Authors: JK & DE
- Status: submitted, awaiting comments and editorial decision
- Goal: Accepted by June 27
- Jason #2: Programmed selection and preferential promotion of disadvantaged bacteria, or equivalent
- Authors: JK & DE
- Status: JK to propose scope of modeling work
- Goal: Submit by June 27
- Reshma #1: A synthetic biology approach to reprogramming bacterial odor
- Authors: RS & DE
- Status: submitted, awaiting comments and editorial decision
- Goal: Accepted by June 27, or revision underway
- Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices
- Authors: RS & DE
- Status: RS to draft a first paragraph-level outline from most recent discussions with DE
- Goal: Submit by June 27
- Samantha #1: Engineering phosphorylation-dependent post-translational protein devices
- Authors: SS & DE
- Status: SS and DE to discuss response to PLoS editors
- Goal: Resubmit by June 4
- Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent
- Authors: SS & DE
- Status: SS to draft paragraph level outline, pending resubmission of SS#1
- Goal: Submit by June 27
- Ty #1: Tools for making systems biology models more scientific
- Authors: TT, DE
- Status: DE to edit, send to Roger for his comments, then to Ty, then final edits and submit
- Goal: Submit by June 13
- Ty #2: Measurement and analysis of protein abundances suggests tradeoff between signaling system output and dynamic range
- Authors: TT, DE
- Status: DE to edit, send to Roger for his comments, then to Ty, then final edits and submit
- Goal: Submit by June 13
- Ty #3: Mechanics, controls, and models of yeast mating response
- Authors: TT, DE
- Status: JT and TT to edit
- Goal: Submit by June 27
- Ty #1. '
- Ty, Thorner, Drew
- Status: DE, JT, & TY to edit.
- Goal:Submit to Yeast.
- Measures & Models of Phage T7 mRNA
- Heather, Drew, Sri
- Status: Sri needs to provide Fig 4, Drew needs to edit (send to PNAS)
- A Common Signal Carrier for Genetic Devices
- Austin, Drew, Tom, Randy, Samantha
- Status: DE to revise and send to MSB
RESEARCH CONCLUDING
- Deterministic cell fate selection during phage lambda infection
- Francois,Drew
- Status: FSP leading experiments
- Bonus: consider what to do with right operator model paper
- An engineered post-translational device
- Samantha, Drew
- Samantha finishing microscopy, gels; revising draft
- Eau d'E.coli
- iGEM 06
- Status: Stephen drafting and finishing bananas characterization
- PoPS toolkit
- Jason and UROP army
- Status: experiments completing, awaiting outline
- Zinc-Finger Logic Gates
- RS, TK, DE
- Status: experiments completing, awaiting outline
- M13.1
- FM, BH, NK, DE
- Status: awaiting synthetic DNA to test. Confirm completion of point mutants
- Low abundance of Ste5 scaffold protein
- KRB, TMT, ..., DE, RB
- Status: TMT finishing modeling work, RY varying Ste5 abundances. Manuscript needs to be updated.
- Blank #1: Title, or equivalent
- Authors: your names here
- Status: your names here
- Goal: Submit by some date
BOOKS
- CoTS
- Drew
- Status: outlining
- I2SB
- Drew
- Status: outlining