Endy:PiP

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(Reshma #1: Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana)
(Barry #1: Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli, or equivalent)
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*Status: Manuscript submitted to PNAS Track II on 5 September
*Status: Manuscript submitted to PNAS Track II on 5 September
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===='''<font color="green">Barry #1</font>''': ''Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli'', or equivalent====
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===='''<font color="green">Barry #1</font>''': ''A simple, self-regulating network of orthogonal RNA polymerases and ribosomes in Escherichia coli'', or equivalent====
*Authors: Barry, Drew
*Authors: Barry, Drew
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*Status: RNA work failed.  Microscopy complete (?)
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*Status: RNA work failed.  Microscopy adequate
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*Writing: First outline complete and under revision, Figures discussed
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*Writing: First outline complete, Barry to draft text. Figures discussed, drafts exist.
*[[User:Barry Canton/Notebook/T7 RNAP transcription of rRNA | Project page]] & [[Endy:Chassis engineering/Paper|Paper page]].
*[[User:Barry Canton/Notebook/T7 RNAP transcription of rRNA | Project page]] & [[Endy:Chassis engineering/Paper|Paper page]].
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*<font color="red">Goal</font>: Barry, what's our goal?
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*<font color="red">Goal</font>: 10/31/08
===='''<font color="green">Jason #1</font>''': ''Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites''====
===='''<font color="green">Jason #1</font>''': ''Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites''====

Revision as of 12:24, 7 September 2008

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This page is for keeping track of the status of papers in the Endy writing queue.


Contents

Research Manuscripts

FSP #1: Deterministic cell fate selection during phage lambda infection

  • Authors: FSP, DE
  • Status: Manuscript submitted to PNAS Track II on 5 September

Barry #1: A simple, self-regulating network of orthogonal RNA polymerases and ribosomes in Escherichia coli, or equivalent

  • Authors: Barry, Drew
  • Status: RNA work failed. Microscopy adequate
  • Writing: First outline complete, Barry to draft text. Figures discussed, drafts exist.
  • Project page & Paper page.
  • Goal: 10/31/08

Jason #1: Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites

Jason #2: Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat, or equivalent

  • Authors: JK & DE
  • Status: Modeling scope, data analysis and writing needs to be completed
  • OWW Page
  • Goal: Jason?

Reshma #1: Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana

  • Authors: RS & DE
  • Status: reviews received, revision complete, sent to RC3 for his comments
  • Goal: Resubmit by 14 September

Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices

  • Authors: RS & DE
  • Status: RS working on figures
  • Goal: Submit by end of August

Samantha #1: Controlling cellular location by engineering phosphorylation

  • Authors: SS & DE
  • Status: In review at PLoS Biology
  • Goal: Have in press in 2008

Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent

  • Authors: SS & DE
  • Status: Outline and structure finalized, SS leading writing
  • Goal: Submit by end of August

Ty #1: Tools for making systems biology models more scientific

  • Authors: TT, DE
  • Status: DE to do final edit, send to RB and TT for final approval
  • Goal: Submit by end of August

Ty #2: Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range

  • Authors: TT, DE
  • Status: sent to RB and TT for final review and approval
  • Goal: Submit by end of August

Ty #3: Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis

  • Authors: TT, DE
  • Status: JT and TT to edit (not working well, what should DE do?)
  • Goal: Submit by ???

Sri #1: Measures & models of phage T7 mRNA

  • Authors: HK, DE, SK
  • Status: Sri needs to provide Fig 4, Drew needs to edit
  • Goal: Submit by end of August

Drew #1: A common signal carrier for genetic devices

  • Authors: Austin, Drew, Tom, Randy, Samantha
  • Status: DE to expand and rewrite
  • Goal: Submit by end of August

Drew #2: Free as in phosphoramidites, or equivalent

  • Authors: DG and DE
  • Status: DE to write
  • Goal: Submit by end of August

BOOKS

DE #1:CoTS

  • Authors: DE
  • Status: DE outlining
  • Goal: Proposal by end of August

DE #2:I2SB

  • Authors: DE
  • Status: DE outlining
  • Goal: Outline by end of August

BLANK

Blank #1: Title, or equivalent

  • Authors: your names here
  • Status: your names here
  • Goal: Submit by some date
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