Endy:PiP: Difference between revisions
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*'''<font color="green">FSP #1</font>''': ''Deterministic cell fate selection during phage lambda infection'' | *'''<font color="green">FSP #1</font>''': ''Deterministic cell fate selection during phage lambda infection'' | ||
**Authors: FSP, DE | **Authors: FSP, DE | ||
**Status: FSP | **Status: Experiments complete, FSP finalizing figures, DE and FSP drafting revision | ||
**<font color="red">Goal</font>: | **<font color="red">Goal</font>: Re-submit before the end of August 2008 | ||
*'''<font color="green">Barry #1</font>''': ''Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli'', or equivalent | *'''<font color="green">Barry #1</font>''': ''Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli'', or equivalent | ||
**Authors: Barry | **Authors: Barry, Drew | ||
**Status: RNA work underway | **Status: RNA work underway, Barry praying for good RNA data | ||
**Writing: First outline complete and under revision, Figures discussed | **Writing: First outline complete and under revision, Figures discussed | ||
**[[User:Barry Canton/Notebook/T7 RNAP transcription of rRNA | Project page]] & [[Endy:Chassis engineering/Paper|Paper page]]. | **[[User:Barry Canton/Notebook/T7 RNAP transcription of rRNA | Project page]] & [[Endy:Chassis engineering/Paper|Paper page]]. | ||
Line 18: | Line 18: | ||
*'''<font color="green">Jason #1</font>''': ''Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites'' | *'''<font color="green">Jason #1</font>''': ''Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites'' | ||
**Authors: JK & DE | **Authors: JK & DE | ||
**Status: | **Status: reviews received, JK and DE struggling through standards theory | ||
**<font color="red">Goal</font>: | **<font color="red">Goal</font>: Resubmit by end of August | ||
*'''<font color="green">Jason #2</font>''': ''Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat,'' or equivalent | *'''<font color="green">Jason #2</font>''': ''Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat,'' or equivalent | ||
**Authors: JK & DE | **Authors: JK & DE | ||
**Status: | **Status: Modeling scope, data analysis and writing needs to be completed | ||
**[[Endy:Notebook/Sortostat_Paper | OWW Page]] | **[[Endy:Notebook/Sortostat_Paper | OWW Page]] | ||
**<font color="red">Goal</font>: Submit by | **<font color="red">Goal</font>: Submit by end of August | ||
*'''<font color="green">Reshma #1</font>''': '' | *'''<font color="green">Reshma #1</font>''': ''Using genetically encoded odorant reporters to engineer | ||
bacteria that smell like wintergreen and banana'' | |||
**Authors: RS & DE | **Authors: RS & DE | ||
**Status: | **Status: reviews received, revision complete, sent to RC3 for his comments | ||
**<font color="red">Goal</font>: | **<font color="red">Goal</font>: Resubmit by end of August | ||
*'''<font color="green">Reshma #2</font>''': ''Signal levels, load, and error rates in engineered transcriptional devices'' | *'''<font color="green">Reshma #2</font>''': ''Signal levels, load, and error rates in engineered transcriptional devices'' | ||
**Authors: RS & DE | **Authors: RS & DE | ||
**Status: RS to draft a first paragraph-level outline from most recent discussions with DE | **Status: RS to draft a first paragraph-level outline from most recent discussions with DE | ||
**<font color="red">Goal</font>: Submit by | **<font color="red">Goal</font>: Submit by end of August | ||
*'''<font color="green">Samantha #1</font>''': '' | *'''<font color="green">Samantha #1</font>''': ''Controlling cellular location by engineering phosphorylation'' | ||
**Authors: SS & DE | **Authors: SS & DE | ||
**Status: | **Status: In review at PLoS Biology | ||
**<font color="red">Goal</font>: | **<font color="red">Goal</font>: pending | ||
*'''<font color="green">Samantha #2</font>''': ''Signals and specifications for a family of phosphorylation-dependent devices,'' or equivalent | *'''<font color="green">Samantha #2</font>''': ''Signals and specifications for a family of phosphorylation-dependent devices,'' or equivalent | ||
**Authors: SS & DE | **Authors: SS & DE | ||
**Status: | **Status: Outline and structure finalized, SS leading writing | ||
**<font color="red">Goal</font>: Submit by June 27 | **<font color="red">Goal</font>: Submit by June 27 | ||
*'''<font color="green">Ty #1</font>''': ''Tools for making systems biology models more scientific'' | *'''<font color="green">Ty #1</font>''': ''Tools for making systems biology models more scientific'' | ||
**Authors: TT, DE | **Authors: TT, DE | ||
**Status: DE to edit, send to | **Status: DE to do final edit, send to RB and TT for final approval | ||
**<font color="red">Goal</font>: Submit by | **<font color="red">Goal</font>: Submit by end of August | ||
*'''<font color="green">Ty #2</font>''': '' | *'''<font color="green">Ty #2</font>''': ''Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range'' | ||
**Authors: TT, DE | **Authors: TT, DE | ||
**Status: | **Status: sent to RB and TT for final review and approval | ||
**<font color="red">Goal</font>: Submit by | **<font color="red">Goal</font>: Submit by end of August | ||
*'''<font color="green">Ty #3</font>''': ''Mechanics, | *'''<font color="green">Ty #3</font>''': ''Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis'' | ||
**Authors: TT, DE | **Authors: TT, DE | ||
**Status: JT and TT to edit | **Status: JT and TT to edit | ||
**<font color="red">Goal</font>: Submit by | **<font color="red">Goal</font>: Submit by ??? | ||
*'''<font color="green">Sri #1</font>''': ''Measures & models of phage T7 mRNA'' | *'''<font color="green">Sri #1</font>''': ''Measures & models of phage T7 mRNA'' | ||
Line 69: | Line 70: | ||
*'''<font color="green">Drew #1</font>''': ''A common signal carrier for genetic devices'' | *'''<font color="green">Drew #1</font>''': ''A common signal carrier for genetic devices'' | ||
**Authors: Austin, Drew, Tom, Randy, Samantha | **Authors: Austin, Drew, Tom, Randy, Samantha | ||
**Status: DE to | **Status: DE to rewrite | ||
**<font color="red">Goal</font>: Submit by June 27 | **<font color="red">Goal</font>: Submit by June 27 | ||
Revision as of 09:37, 11 August 2008
This page is for keeping track of the status of papers in the Endy writing queue.
WRITING
- FSP #1: Deterministic cell fate selection during phage lambda infection
- Authors: FSP, DE
- Status: Experiments complete, FSP finalizing figures, DE and FSP drafting revision
- Goal: Re-submit before the end of August 2008
- Barry #1: Towards a biological virtual machine: an autoregulating network of RNA polymerases and ribosomes in Escherichia coli, or equivalent
- Authors: Barry, Drew
- Status: RNA work underway, Barry praying for good RNA data
- Writing: First outline complete and under revision, Figures discussed
- Project page & Paper page.
- Goal: Submit before the end of August 2008
- Jason #1: Measurement kits and reference standards for characterizing BioBrick promoters and ribosome binding sites
- Authors: JK & DE
- Status: reviews received, JK and DE struggling through standards theory
- Goal: Resubmit by end of August
- Jason #2: Programmed selection and preferential promotion of disadvantaged bacteria in a microfluidic sortostat, or equivalent
- Authors: JK & DE
- Status: Modeling scope, data analysis and writing needs to be completed
- OWW Page
- Goal: Submit by end of August
- Reshma #1: Using genetically encoded odorant reporters to engineer
bacteria that smell like wintergreen and banana
- Authors: RS & DE
- Status: reviews received, revision complete, sent to RC3 for his comments
- Goal: Resubmit by end of August
- Reshma #2: Signal levels, load, and error rates in engineered transcriptional devices
- Authors: RS & DE
- Status: RS to draft a first paragraph-level outline from most recent discussions with DE
- Goal: Submit by end of August
- Samantha #1: Controlling cellular location by engineering phosphorylation
- Authors: SS & DE
- Status: In review at PLoS Biology
- Goal: pending
- Samantha #2: Signals and specifications for a family of phosphorylation-dependent devices, or equivalent
- Authors: SS & DE
- Status: Outline and structure finalized, SS leading writing
- Goal: Submit by June 27
- Ty #1: Tools for making systems biology models more scientific
- Authors: TT, DE
- Status: DE to do final edit, send to RB and TT for final approval
- Goal: Submit by end of August
- Ty #2: Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range
- Authors: TT, DE
- Status: sent to RB and TT for final review and approval
- Goal: Submit by end of August
- Ty #3: Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis
- Authors: TT, DE
- Status: JT and TT to edit
- Goal: Submit by ???
- Sri #1: Measures & models of phage T7 mRNA
- Authors: HK, DE, SK
- Status: Sri needs to provide Fig 4, Drew needs to edit
- Goal: Submit by June 27
- Drew #1: A common signal carrier for genetic devices
- Authors: Austin, Drew, Tom, Randy, Samantha
- Status: DE to rewrite
- Goal: Submit by June 27
- Drew #2: Free as in phosphoramidites, or equivalent
- Authors: DG and DE
- Status: DE to write
- Goal: Submit by June 7
BOOKS
- DE #1:CoTS
- Authors: DE
- Status: DE outlining
- Goal: ??
- DE #2:I2SB
- Authors: DE
- Status: DE outlining
- Goal: ??
BLANK
- Blank #1: Title, or equivalent
- Authors: your names here
- Status: your names here
- Goal: Submit by some date