Ellis:Publications

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! <b>Synthetic Biology</b>
! <b>Synthetic Biology</b>
| One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy
| One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy
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| '''Casini A''', Macdonald JT, '''De Jonghe J''', Christodoulou G, Freemont P, Baldwin GS, '''Ellis T'''
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| '''Casini A''', Macdonald JT, '''De Jonghe J, Christodoulou G''', Freemont P, Baldwin GS, '''Ellis T'''
| '''Nucleic Acids Research''', Oct 2013 [http://nar.oxfordjournals.org/content/early/2013/10/22/nar.gkt915 DOI Link]
| '''Nucleic Acids Research''', Oct 2013 [http://nar.oxfordjournals.org/content/early/2013/10/22/nar.gkt915 DOI Link]
| [http://nar.oxfordjournals.org/content/early/2013/10/22/nar.gkt915.full-text-lowres.pdf View PDF]
| [http://nar.oxfordjournals.org/content/early/2013/10/22/nar.gkt915.full-text-lowres.pdf View PDF]
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| '''arXiv Q-Bio''', Sep 2013 [http://arxiv.org/abs/1309.7798 DOI Link]
| '''arXiv Q-Bio''', Sep 2013 [http://arxiv.org/abs/1309.7798 DOI Link]
| [http://arxiv.org/pdf/1309.7798v1.pdf View PDF]
| [http://arxiv.org/pdf/1309.7798v1.pdf View PDF]
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| [[Image:ArXivRhys.jpg|160px|right|Microbiology]]
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| [[Image:ArXivRhys.jpg|160px|right|arXiv Q-Bio]]
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|-
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| Creation and characterization of component libraries for synthetic biology
| Creation and characterization of component libraries for synthetic biology
| '''Weenink T, Ellis T'''
| '''Weenink T, Ellis T'''
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| '''Methods in Molecular Biology''', 2013 Vol. 1073 pp 51-60 [http://mic.sgmjournals.org/content/159/Pt_7/1221.full DOI Link]
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| '''Methods in Molecular Biology''', 2013 Vol. 1073 pp 51-60 [http://dx.doi.org/10.1007/978-1-62703-625-2_6 DOI Link]
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| [http://openwetware.org/images/9/98/MicrobioOllie.pdf View PDF]
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| Book Chapter
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| [[Image:Biosecurity.png|160px|right|Microbiology]]
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| [[Image:TimFig2.pdf|160px|right|Methods in Mol Biol]]
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Revision as of 09:55, 25 October 2013

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Click the links to read our papers

We're in the lab right now working on new publications. Latest Update: OCT 2013

Title Authors Published PDF Screenshot
Synthetic Biology One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy Casini A, Macdonald JT, De Jonghe J, Christodoulou G, Freemont P, Baldwin GS, Ellis T Nucleic Acids Research, Oct 2013 DOI Link View PDF
NAR
Modelling the burden caused by gene expression: an in silico investigation into the interactions between synthetic gene circuits and their chassis cell Algar R, Ellis T, Stan GB arXiv Q-Bio, Sep 2013 DOI Link View PDF
arXiv Q-Bio
Creation and characterization of component libraries for synthetic biology Weenink T, Ellis T Methods in Molecular Biology, 2013 Vol. 1073 pp 51-60 DOI Link Book Chapter Image:TimFig2.pdf
Characterisation of genetic control elements for synthetic biology using the Spinach RNA aptamer Pothoulakis G, Ceroni F, Reeve B, Ellis T ACS Synthetic Biology, Sept 2013 DOI Link View PDF
Microbiology
Engineering of regulated stochastic cell fate determination Wu W, Su RQ, Ellis T, Lai YC, Wang X PNAS USA, 2013 DOI Link View PDF
PNAS USA
Building-in Biosafety for Synthetic Biology Wright O, Stan GB, Ellis T Microbiology, March 2013 DOI Link View PDF
Microbiology
Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology Blount BA, Weenink T, Vasylechko S, Ellis T PLoS One, March 2012 DOI Link View PDF
PLoS One
Construction of synthetic regulatory networks in yeast Blount BA, Weenink T, Ellis T FEBS Letters, Feb 2012 DOI Link View PDF
FEBS Letters
DNA assembly for synthetic biology: from parts to pathways and beyond Ellis T, Adie T, Baldwin GS Integrative Biology, 2011, Vol 3, Page 109 DOI Link View PDF
Integrative Biology
Diversity-based, model-guided construction of synthetic gene networks with predicted functions Ellis T, Wang X, Collins JJ Nature Biotechnology, 2009, Vol 27, Page 465 DOI Link View PDF
Nature Biotech
Synthesis and screening of regulatory component libraries for synthetic biology Ellis T Nature Protocols, 2009 DOI Link View PDF
Nature Protocols
Gene regulation: hacking the network on a sugar high Ellis T, Wang X, Collins JJ Molecular Cell, 2008, Vol 30, Page 1 DOI Link View PDF
Mol Cell
DNA-Binding An Extended PBD-Polyamide Conjugate with Selectivity for the ICB2 Transcription Factor Binding Site Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, Ellis T, Kotecha M, Hartley JA, Howard PW, Thurston DE J Med Chem, 2013, Vol 56, Page 6339 [1] View PDF
Bioorg Med Chem Lett
Novel C8-linked pyrrolobenzodiazepine (PBD)-heterocycle conjugates that recognize DNA sequences containing an inverted CCAAT box Brucoli F, Hawkins RM, James CH, Wells G, Jenkins TC, Ellis T, Hartley JA, Howard PW, Thurston DE Bioorg Med Chem Letters, 2011, Vol 21, Page 3780 [2] View PDF
Bioorg Med Chem Lett
Molecular recognition of DNA by rigid [N]-polynorbornane derived bifunctional intercalators: synthesis and evaluation of their binding properties Van Vliet LD, Ellis T, Foley PJ, Liu L, Pfeffer FM, Russell RA, Warrener RN, Hollfelder F, Waring MJ Journal of Medicinal Chemistry, 2007, Vol 50, Page 2326 DOI Link View PDF
J Med Chem
A 96-well DNase I footprinting screen for drug-DNA interactions Ellis T, Evans DA, Martin CR, Hartley JA Nucleic Acids Research, 2007, Vol 35 DOI Link View PDF
NAR
Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: footprinting and enzyme inhibition studies Martin C, Ellis T, McGurk CJ, Jenkins TC, Hartley JA, Waring MJ, Thurston DE Biochemistry, 2005, Vol 44, Page 4135 DOI Link View PDF
Biochemistry
DNase I footprinting of small molecule binding sites on DNA Bailly C, Kluza J, Martin C, Ellis T, Waring MJ Methods in Molecular Biology, 2005, Vol 288, Page 319 DOI Link Book Chapter
Meth Mol Biol
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