David Lowry: Difference between revisions
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California State University, Monterey Bay: Assistant Professor, Starting in 2014 | |||
The University of Texas at Austin: USDA NIFA Postdoctoral Fellow, 2010-2013 | |||
The University of California, Berkeley: BS, | Duke University: PhD, 2004-2010 | ||
The University of California, Berkeley: BS, 1997-2001 | |||
==Research Interests== | ==Research Interests== | ||
[[Image: | [[Image:Perdenales.jpg|thumb|left|Switchgrass in its native riparian habitat in central Texas]] | ||
[[Image:Lowry_field_2.JPG|thumb|right|Field experiment with ''Mimulus guttatus'']] | [[Image:Lowry_field_2.JPG|thumb|right|Field experiment with ''Mimulus guttatus'']] | ||
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One of the core goals of my research program is to understand how the natural landscape molds the genomes of organisms through adaptation. To that end, I am using a combination of genetic mapping and genome sequencing approaches to identify genes involved with adaptation to the heterogeneity of the natural landscape. During my dissertation, I focused on how adaptive alleles in ''Mimulus guttatus'' are spread across the landscape and what phenotypic effects they have in different environments across western North America. Currently, I am developing ''Panicum'' grasses as a model system to understand adaptation along a longitudinal soil moisture cline across Southwestern United States and a latitudinal temperature cline across the Great Plains. Our lab recently [http://www.utexas.edu/news/2012/08/02/biologist-grant-study-potential-biofuel-crops/ received funding from the Department of Energy] to develop ''Panicum hallii'' as a model system for local adaptation and bioenergy research. | One of the core goals of my research program is to understand how the natural landscape molds the genomes of organisms through adaptation. To that end, I am using a combination of genetic mapping and genome sequencing approaches to identify genes involved with adaptation to the heterogeneity of the natural landscape. During my dissertation, I focused on how adaptive alleles in ''Mimulus guttatus'' are spread across the landscape and what phenotypic effects they have in different environments across western North America. Currently, I am developing ''Panicum'' grasses as a model system to understand adaptation along a longitudinal soil moisture cline across Southwestern United States and a latitudinal temperature cline across the Great Plains. Our lab recently [http://www.utexas.edu/news/2012/08/02/biologist-grant-study-potential-biofuel-crops/ received funding from the Department of Energy] to develop ''Panicum hallii'' as a model system for local adaptation and bioenergy research. | ||
[[Image:Diversity.JPG|thumb|left|Phenotypic diversity of Switchgrass, ''Panicum virgatum'']] | |||
[[Image:Field_2012.JPG|thumb|right|Field experiment with ''Panicum hallii'']] | [[Image:Field_2012.JPG|thumb|right|Field experiment with ''Panicum hallii'']] | ||
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[[Image:PhilTransCover.jpg|thumb|right|]] | [[Image:PhilTransCover.jpg|thumb|right|]] | ||
'''PDFs for publications available through my''' [http://davidbryantlowry.wordpress.com/publications/ '''website'''] | |||
Meyer, E., M. J. Aspinwall, '''D. B. Lowry''', J. Palacio-Mejía, T. L. Logan, P. A. Fay, T. E. Juenger. Integrating physiological, transcriptional, and metabolomic responses to drought stress and recovery in switchgrass (''Panicum virgatum'' L.). ''Submitted'' | |||
'''Lowry D. B.''', K. D. Behrman, P. Grabowski, G. P. Morris, J. R. Kiniry, T. E. Juenger. Local and climatic adaptations across the ''Panicum virgatum'' species complex. ''In review'' | '''Lowry D. B.''', K. D. Behrman, P. Grabowski, G. P. Morris, J. R. Kiniry, T. E. Juenger. Local and climatic adaptations across the ''Panicum virgatum'' species complex. ''In review'' | ||
'''Lowry, D. B.''', T. L. Logan, L. Santuari, C. S. Hardtke, J. H. Richards, L. J. DeRose-Wilson, J. K. McKay, S. Sen, T. E. Juenger. The genomic architecture of transcriptional response to soil water availability in the Tsu x Kas mapping population of ''Arabidopsis thaliana.'' ''In revision'' | |||
'''Lowry | '''Lowry D. B.''', R. Hopkins. (2013) “Speciation and Natural Selection.” Invited book chapter in The Princeton Guide to Evolution, edited by Jonathan Losos. Princeton, NJ: Princeton University Press. ''In press'' | ||
[http://onlinelibrary.wiley.com/doi/10.1111/nph.12341/full Aspinwall M. J., '''D. B. Lowry''', S. H. Taylor, T. E. Juenger, C. V. Hawkes, M. V. Johnson, J. R. Kiniry, P. A. Fay. (2013) Genotypic variation in traits linked to climate and aboveground productivity in a widespread C4 grass: evidence for a functional trait syndrome New Phytologist ''In press''] | |||
''' | [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001497 Wright, K. M., D. Lloyd, '''D. B. Lowry''', M. R. Macnair, J. H. Willis. (2013) Indirect evolution of hybrid lethality due to linkage with a selected locus in ''Mimulus guttatus.'' PLoS Biology 11: e1001497] | ||
[http://www.amjbot.org/content/early/2013/02/19/ajb.1200379.abstract '''Lowry, D. B.''', C. T. Purmal, T. E. Juenger. (2013) A population genetic transect of ''Panicum hallii'' (Poaceae). American Journal of Botany. 100:592-601] | |||
[http://onlinelibrary.wiley.com/doi/10.1111/j.1469-8137.2012.04146.x/full '''Lowry D. B.''' (2012) Local adaptation in The model plant. New Phytologist. 194: 888-890.] | [http://onlinelibrary.wiley.com/doi/10.1111/j.1469-8137.2012.04146.x/full '''Lowry D. B.''' (2012) Local adaptation in The model plant. New Phytologist. 194: 888-890.] | ||
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[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000500 '''Lowry, D.B.,''' J. H. Willis. (2010) A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation. PLoS Biology 8: e1000500] | [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000500 '''Lowry, D.B.,''' J. H. Willis. (2010) A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation. PLoS Biology 8: e1000500] | ||
[http://www3.interscience.wiley.com/journal/123501089/abstract Hall M. C., '''D. B. Lowry''', J. H. Willis. (2010). | [http://www3.interscience.wiley.com/journal/123501089/abstract Hall M. C., '''D. B. Lowry''', J. H. Willis. (2010). Is local adaptation in ''Mimulus guttatus'' caused by trade-offs at individual loci? Molecular Ecology. 19: 2739-2753] | ||
[http://rsbl.royalsocietypublishing.org/content/early/2010/01/22/rsbl.2009.0969.full '''Lowry, D. B.''' (2010) Landscape evolutionary genomics. Biology Letters. 6: 502-504] | [http://rsbl.royalsocietypublishing.org/content/early/2010/01/22/rsbl.2009.0969.full '''Lowry, D. B.''' (2010) Landscape evolutionary genomics. Biology Letters. 6: 502-504] | ||
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==Important Things== | ==Important Things== | ||
*[[David Lowry CV | *[http://davidbryantlowry.wordpress.com/ My website] | ||
*[http://davidbryantlowry.wordpress.com/cv/ David Lowry CV] | |||
*[http://scholar.google.com/citations?view_op=list_works&hl=en&user=yp5xdBEAAAAJ&gmla=AJsN-F6DFaPZ9A0TNBwOFnsWZf9Y9S7rGntDIzs1ZOqg52GhHzGJ090M-xxUubHEHF3dyXE6XlN-jmJ1uYNJiAULSHsEkKAaqniu606ZwKxaDjIwB3wfiIkspwU-gntSRaYs7bNl5Mmy Google Scholar Citations ] | *[http://scholar.google.com/citations?view_op=list_works&hl=en&user=yp5xdBEAAAAJ&gmla=AJsN-F6DFaPZ9A0TNBwOFnsWZf9Y9S7rGntDIzs1ZOqg52GhHzGJ090M-xxUubHEHF3dyXE6XlN-jmJ1uYNJiAULSHsEkKAaqniu606ZwKxaDjIwB3wfiIkspwU-gntSRaYs7bNl5Mmy Google Scholar Citations ] | ||
*[https://github.com/davidbryantlowry Programming Scripts on Github] | |||
*'''Contact Info:''' You can contact me at davidbryantlowry@gmail.com. | *'''Contact Info:''' You can contact me at davidbryantlowry@gmail.com. | ||
*Make sure to check out the [[Mimulus Community]] and the [[Texas Switchgrass Collaborative]]. | *Make sure to check out the [[Mimulus Community]] and the [[Texas Switchgrass Collaborative]]. |
Revision as of 11:28, 1 June 2013
California State University, Monterey Bay: Assistant Professor, Starting in 2014
The University of Texas at Austin: USDA NIFA Postdoctoral Fellow, 2010-2013
Duke University: PhD, 2004-2010
The University of California, Berkeley: BS, 1997-2001
Research Interests
![](https://s3-us-west-2.amazonaws.com/oww-files-thumb/8/88/Perdenales.jpg/300px-Perdenales.jpg)
The genetics of adaptation and speciation
Adaptation is the most fundamental way that the environment can change the phenotypes of organisms. Adaptations can also lead to the formation of reproductive isolating barriers, which are the building blocks of new species. I am very interested in understanding the genetic underpinnings of reproductive isolation at various stages in the speciation process.
Understanding adaptation is also crucial to predicting how organisms will respond to future global change and will help inform management decisions as well as guide future agricultural breeding.
Landscape evolutionary genomics
One of the core goals of my research program is to understand how the natural landscape molds the genomes of organisms through adaptation. To that end, I am using a combination of genetic mapping and genome sequencing approaches to identify genes involved with adaptation to the heterogeneity of the natural landscape. During my dissertation, I focused on how adaptive alleles in Mimulus guttatus are spread across the landscape and what phenotypic effects they have in different environments across western North America. Currently, I am developing Panicum grasses as a model system to understand adaptation along a longitudinal soil moisture cline across Southwestern United States and a latitudinal temperature cline across the Great Plains. Our lab recently received funding from the Department of Energy to develop Panicum hallii as a model system for local adaptation and bioenergy research.
Using evolutionary biology to improve bioenergy crops
Civilization is built on a foundation of domesticated grasses. Without those grasses (corn, wheat, rice, oats, barley, sorghum) there would be no ballet and human beings would never of landed on the moon. Plant breeders have quietly worked in the shadows to increase the yield of crops and in turn maintain our modern world.
Now, there may actually be potential to domesticate a new set of grass species to use to help combat the growing energy problem. My research is focused understanding the factors involved in local adaptation in the bioenergy crop switchgrass (Panicum virgatum). Loci involved in local adaptation are likely to be of high value to crop breeders interested in improving drought, heat, cold, herbivore, and disease tolerance.
Publications
![](https://s3-us-west-2.amazonaws.com/oww-files-public/4/41/PLoS.jpg)
![](https://s3-us-west-2.amazonaws.com/oww-files-public/8/8c/PhilTransCover.jpg)
PDFs for publications available through my website
Meyer, E., M. J. Aspinwall, D. B. Lowry, J. Palacio-Mejía, T. L. Logan, P. A. Fay, T. E. Juenger. Integrating physiological, transcriptional, and metabolomic responses to drought stress and recovery in switchgrass (Panicum virgatum L.). Submitted
Lowry D. B., K. D. Behrman, P. Grabowski, G. P. Morris, J. R. Kiniry, T. E. Juenger. Local and climatic adaptations across the Panicum virgatum species complex. In review
Lowry, D. B., T. L. Logan, L. Santuari, C. S. Hardtke, J. H. Richards, L. J. DeRose-Wilson, J. K. McKay, S. Sen, T. E. Juenger. The genomic architecture of transcriptional response to soil water availability in the Tsu x Kas mapping population of Arabidopsis thaliana. In revision
Lowry D. B., R. Hopkins. (2013) “Speciation and Natural Selection.” Invited book chapter in The Princeton Guide to Evolution, edited by Jonathan Losos. Princeton, NJ: Princeton University Press. In press
Lowry D. B. (2012) Local adaptation in The model plant. New Phytologist. 194: 888-890.
Lowry, D. B. (2010) Landscape evolutionary genomics. Biology Letters. 6: 502-504
![](https://s3-us-west-2.amazonaws.com/oww-files-public/a/a5/Evolution_cover.jpg)
Important Things
- Contact Info: You can contact me at davidbryantlowry@gmail.com.
- Make sure to check out the Mimulus Community and the Texas Switchgrass Collaborative.