Dahlquist:TRACE Documentation: Difference between revisions
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The purpose of this wiki page is to develop a TRACE document for GRNmap | The purpose of this wiki page is to develop a TRACE document for GRNmap. We will first develop our documentation on this wiki page and then create the Word/PDF documents. | ||
We will first develop our documentation on this wiki page and then create the Word/PDF documents. | |||
== Preamble == | == Preamble == | ||
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was thoughtfully designed, correctly implemented, thoroughly tested, well understood, and appropriately used for its intended purpose. | was thoughtfully designed, correctly implemented, thoroughly tested, well understood, and appropriately used for its intended purpose. | ||
The rationale of this document follows: | The rationale of this document follows: | ||
Schmolke A, Thorbek P, DeAngelis | [http://www.sciencedirect.com/science/article/pii/S016953471000100X Schmolke, A., Thorbek, P., DeAngelis, D. L., & Grimm, V. (2010). Ecological models supporting environmental decision making: a strategy for the future. ''Trends in ecology & evolution, 25(8),'' 479-486.] | ||
and uses the updated standard terminology and document structure in: | and uses the updated standard terminology and document structure in: | ||
Grimm V, Augusiak J, Focks A, Frank B, Gabsi F, Johnston | * [http://www.sciencedirect.com/science/article/pii/S0304380014000611 Grimm, V., Augusiak, J., Focks, A., Frank, B. M., Gabsi, F., Johnston, A. S., ... & Thorbek, P. (2014). Towards better modelling and decision support: documenting model development, testing, and analysis using TRACE. ''Ecological Modelling, 280,'' 129-139.] | ||
** [http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0304380014000611/1-s2.0-S0304380014000611-mmc1.docx/271743/html/S0304380014000611/c511c3eaed6e81bbbee892ee712792de/mmc1.docx TRACE template Word document] | |||
** [http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0304380014000611/1-s2.0-S0304380014000611-mmc2.pdf/271743/html/S0304380014000611/d22efa4449a2f695852591844f0cafcb/mmc2.pdf TRACE document example 1] | |||
** [http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0304380014000611/1-s2.0-S0304380014000611-mmc3.pdf/271743/html/S0304380014000611/af4dac7fe0b438d6e36f2b79f2493fcd/mmc3.pdf TRACE document example 2] | |||
** [http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0304380014000611/1-s2.0-S0304380014000611-mmc4.pdf/271743/html/S0304380014000611/e111a0fc066865ce667265f53f009097/mmc4.pdf TRACE document example 3] | |||
and | and | ||
Augusiak J, Van den Brink | [http://www.sciencedirect.com/science/article/pii/S0304380013005450 Augusiak, J., Van den Brink, P. J., & Grimm, V. (2014). Merging validation and evaluation of ecological models to ‘evaludation’: a review of terminology and a practical approach. ''Ecological Modelling, 280,'' 117-128.] | ||
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Revision as of 12:59, 28 January 2016
The purpose of this wiki page is to develop a TRACE document for GRNmap. We will first develop our documentation on this wiki page and then create the Word/PDF documents.
Preamble
This is a TRACE document (“TRAnsparent and Comprehensive model Evaludation”) which provides supporting evidence that our model presented in:
GRNmap: Gene Regulatory Network Modeling and Parameter Estimation
was thoughtfully designed, correctly implemented, thoroughly tested, well understood, and appropriately used for its intended purpose.
The rationale of this document follows:
and uses the updated standard terminology and document structure in:
and
1. Problem Formulation
2. Model Description
3. Data Evaluation
4. Conceptual Model Evaluation
5. Implementation Verification
6. Model Output Verification
7. Model Analysis
8. Model Output Corroboration
Links to Other Standards
Note that this is not part of the TRACE standard itself, but a place to put useful links to other standards.
