Dahlquist:SURP 2015 Schedule: Difference between revisions
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(→Δnrg1: added sum) |
(→Strain Voting: ordered by votes most to least in two categories) |
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== Strain Voting == | == Strain Voting == | ||
=== ''Δyap1''=== | |||
*Within-strain | |||
**1, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:40, 20 May 2015 (EDT) | |||
**2, [[User:Natalie Williams|Natalie Williams]] 14:44, 20 May 2015 (EDT) | |||
**0, [[User:Tessa A. Morris|Tessa A. Morris]] 14:47, 20 May 2015 (EDT) | |||
**1, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:50, 20 May 2015 (EDT) | |||
**1, [[User:Kevin Wyllie|Kevin Wyllie]] 14:54, 20 May 2015 (EDT) | |||
*Between-strain | |||
**0, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:40, 20 May 2015 (EDT) | |||
**2, [[User:Natalie Williams|Natalie Williams]] 14:44, 20 May 2015 (EDT) | |||
**2, [[User:Tessa A. Morris|Tessa A. Morris]] 14:47, 20 May 2015 (EDT) | |||
**0, [[User:Anindita Varshneya|Anindita Varshneya]] 14:49, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:50, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:54, 20 May 2015 (EDT) | |||
* '''Total 5 + 4 = 9''' | |||
=== ''Δino2'' === | === ''Δino2'' === | ||
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* '''Total 1 + 0 = 1''' | * '''Total 1 + 0 = 1''' | ||
---- | |||
=== '' | === ''Δrtg3''=== | ||
*Within-strain | *Within-strain | ||
**0, [[User: | **0, [[User:Tessa A. Morris|Tessa A. Morris]] 14:45, 20 May 2015 (EDT) | ||
**0, [[User: | **0, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:45, 20 May 2015 (EDT) | ||
** | **2, [[User:Natalie Williams|Natalie Williams]] 14:49, 20 May 2015 (EDT) | ||
**0, [[User:Kevin | **0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:50, 20 May 2015 (EDT) | ||
**0, [[User:Kevin | **0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:51, 20 May 2015 (EDT) | ||
*Between-strain | * Between-strain ANOVA | ||
** | ** 2, [[User:Kam D. Dahlquist|Kam D. Dahlquist]] 14:42, 20 May 2015 (EDT) (wt v. dZAP1) | ||
** | **2, [[User:Tessa A. Morris|Tessa A. Morris]] 14:45, 20 May 2015 (EDT) | ||
** | **2, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:45, 20 May 2015 (EDT) | ||
**0, [[User: | **3, [[User:Natalie Williams|Natalie Williams]] 14:49, 20 May 2015 (EDT) | ||
**0, [[User: | **0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:50, 20 May 2015 (EDT) | ||
** | **0, [[User:Anindita Varshneya|Anindita Varshneya]] 14:51, 20 May 2015 (EDT) | ||
* '''Total | **2, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:51, 20 May 2015 (EDT) | ||
* '''Total = 2 + 11 = 13''' | |||
=== ''Δrsf2''=== | === ''Δrsf2''=== | ||
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**0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:52, 20 May 2015 (EDT) | **0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:52, 20 May 2015 (EDT) | ||
* '''Total = 6 + 7 = 13''' | * '''Total = 6 + 7 = 13''' | ||
=== ''Δtbf1''=== | === ''Δtbf1''=== | ||
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**2 [[User:Anindita Varshneya|Anindita Varshneya]] 14:53, 20 May 2015 (EDT) | **2 [[User:Anindita Varshneya|Anindita Varshneya]] 14:53, 20 May 2015 (EDT) | ||
* '''Total = 3 + 9 = 12''' | * '''Total = 3 + 9 = 12''' | ||
=== ''Δyox1''=== | |||
*Within-strain | |||
**1, [[User:Tessa A. Morris|Tessa A. Morris]] 14:41, 20 May 2015 (EDT) | |||
**1, [[User:Kevin Wyllie|Kevin Wyllie]] 14:48, 20 May 2015 (EDT) | |||
**2, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:49, 20 May 2015 (EDT) | |||
**2, [[User:Natalie Williams|Natalie Williams]] 14:50, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:54, 20 May 2015 (EDT) | |||
*Between-strain | |||
**0, [[User:Tessa A. Morris|Tessa A. Morris]] 14:41, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:48, 20 May 2015 (EDT) | |||
**0, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:49, 20 May 2015 (EDT) | |||
**2, [[User:Natalie Williams|Natalie Williams]] 14:50, 20 May 2015 (EDT) | |||
**2, [[User:Anindita Varshneya|Anindita Varshneya]] 14:53, 20 May 2015 (EDT) | |||
**2, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:54, 20 May 2015 (EDT) | |||
* '''Total = 6 + 6 = 12''' | |||
=== ''Δyhp1''=== | === ''Δyhp1''=== | ||
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**2, [[User:Anindita Varshneya|Anindita Varshneya]] 14:53, 20 May 2015 (EDT) | **2, [[User:Anindita Varshneya|Anindita Varshneya]] 14:53, 20 May 2015 (EDT) | ||
* '''Total = 4 + 6 = 10''' | * '''Total = 4 + 6 = 10''' | ||
=== ''Δphd1''=== | === ''Δphd1''=== | ||
Line 413: | Line 399: | ||
**0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:54, 20 May 2015 (EDT) | **0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:54, 20 May 2015 (EDT) | ||
* '''Total = 5 + 4 = 9''' | * '''Total = 5 + 4 = 9''' | ||
=== ''Δarg80''=== | |||
*Within-strain | |||
**0, [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:41, 20 May 2015 (EDT) | |||
**0, [[User:Tessa A. Morris|Tessa A. Morris]] 14:46, 20 May 2015 (EDT) | |||
**0, [[User:Natalie Williams|Natalie Williams]] 14:47, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:50, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:53, 20 May 2015 (EDT) | |||
*Between-strain | |||
**0 [[User:Katherine Grace Johnson|Katherine Grace Johnson]] 14:41, 20 May 2015 (EDT) | |||
**0, [[User:Tessa A. Morris|Tessa A. Morris]] 14:46, 20 May 2015 (EDT) | |||
**0, [[User:Natalie Williams|Natalie Williams]] 14:47, 20 May 2015 (EDT) | |||
**0, [[User:Anindita Varshneya|Anindita Varshneya]] 14:49, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Patrick McGee|Kevin Patrick McGee]] 14:50, 20 May 2015 (EDT) | |||
**0, [[User:Kevin Wyllie|Kevin Wyllie]] 14:53, 20 May 2015 (EDT) | |||
* '''Total 0 + 0 = 0''' |
Revision as of 15:19, 22 May 2015
SURP 2015 Schedule
Week | Date | Wet Lab | GRNsight | GRNmap | Meetings & Events |
1 | Mon
May 18 |
AM: How to wiki, PowerPoint overview
PM: Within- and between-array normalization, one-strain ANOVA |
| ||
Tues
May 19 |
AM: Modified T test
PM: Between-strain ANOVA, clustering with stem, preparation of GenMAPP input sheet, "Deception at Duke" video, "Baggerly: Forensic Bioinformatics" video, research ethics discussion |
| |||
Wed
May 20 |
|
GenMAPP, YEASTRACT |
| ||
2 | Tues
May 26 |
AM: F1 cDNA synthesis
PM: F1 cDNA purification, aRNA synthesis |
|||
Wed
May 27 |
| ||||
Thurs
May 28 |
AM: F1 aRNA purification, quantification
PM: F1 aRNA gel |
| |||
3 | Mon
June 1 |
AM: dry F1 aRNA, F1 cDNA synthesis
PM: F1 label & hybe |
|||
Tues
June 2 |
AM: F1 wash & scan
PM: F2 cDNA purification, aRNA synthesis |
||||
Wed
June 3 |
AM: F2 aRNA purification, quantification
PM: F2 aRNA gel |
| |||
4 | Mon
June 8 |
AM: dry F2 aRNA, F3 cDNA synthesis
PM: F2 label & hybe |
|||
Tues
June 9 |
AM: F2 wash & scan
PM: F3 cDNa purification, aRNA synthesis |
||||
Wed
June 10 |
AM: F3 aRNA purification, quantification
PM: F3 aRNA gel |
| |||
5 | Mon
June 15 |
AM: dry F3 aRNA, F4 cDNA synthesis
PM: F3 label & hybe |
(KD at BioQUEST workshop) | ||
Tues
June 16 |
AM: F3 wash & scan
PM: F4 cDNA purification, aRNA synthesis |
(KD at BioQUEST workshop) | |||
Wed
June 17 |
AM: F4 aRNA purification, quantification
PM: F4 aRNA gel |
| |||
6 | Mon
June 22 |
AM:
PM: F4 label & hybe |
|||
Tues
June 23 |
AM: F4 wash & scan | ||||
Wed
June 24 |
Lab check-out |
Lab check-out |
Lab check-out |
|
Strain Voting
Δyap1
- Within-strain
- 1, Katherine Grace Johnson 14:40, 20 May 2015 (EDT)
- 2, Natalie Williams 14:44, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
- 1, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
- 1, Kevin Wyllie 14:54, 20 May 2015 (EDT)
- Between-strain
- 0, Katherine Grace Johnson 14:40, 20 May 2015 (EDT)
- 2, Natalie Williams 14:44, 20 May 2015 (EDT)
- 2, Tessa A. Morris 14:47, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:49, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:54, 20 May 2015 (EDT)
- Total 5 + 4 = 9
Δino2
- Within-strain
- 2, Katherine Grace Johnson 14:36, 20 May 2015 (EDT)
- 1, Kevin Wyllie 14:39, 20 May 2015 (EDT)
- 1, Natalie Williams 14:41, 20 May 2015 (EDT)
- 1, Tessa A. Morris 14:48, 20 May 2015 (EDT)
- 2, Kevin Patrick McGee 14:49, 20 May 2015 (EDT)
- Between-strain
- 0, Katherine Grace Johnson 14:36, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:39, 20 May 2015 (EDT)
- 0, Natalie Williams 14:41, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:47, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:48, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:49, 20 May 2015 (EDT)
- Total = 7 + 0 = 7
Δopi1
- Within-Strain
- 1 Katherine Grace Johnson 14:39, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:40, 20 May 2015 (EDT)
- 0, Natalie Williams 14:42, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
- Between-Strain
- 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
- 0 Katherine Grace Johnson 14:39, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:40, 20 May 2015 (EDT)
- 0, Natalie Williams 14:42, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:47, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:47, 20 May 2015 (EDT)
- Total 1 + 0 = 1
Δrtg3
- Within-strain
- 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:45, 20 May 2015 (EDT)
- 2, Natalie Williams 14:49, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:50, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:51, 20 May 2015 (EDT)
- Between-strain ANOVA
- 2, Kam D. Dahlquist 14:42, 20 May 2015 (EDT) (wt v. dZAP1)
- 2, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:45, 20 May 2015 (EDT)
- 3, Natalie Williams 14:49, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:50, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:51, 20 May 2015 (EDT)
- 2, Kevin Patrick McGee 14:51, 20 May 2015 (EDT)
- Total = 2 + 11 = 13
Δrsf2
- Within-Strain ANOVA
- 2, Katherine Grace Johnson 14:44, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- 2, Natalie Williams 14:48, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:51, 20 May 2015 (EDT)
- 2, Kevin Wyllie 14:52, 20 May 2015 (EDT)
- Between-strain ANOVA
- 2, Kam D. Dahlquist 14:41, 20 May 2015 (EDT) (wt v. dZAP1)
- 3, Katherine Grace Johnson 14:44, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:45, 20 May 2015 (EDT)
- 2, Natalie Williams 14:48, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:51, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:51, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:52, 20 May 2015 (EDT)
- Total = 6 + 7 = 13
Δtbf1
- Within-strain
- 0, Tessa A. Morris 14:44, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:46, 20 May 2015 (EDT)
- 0, Natalie Williams 14:49, 20 May 2015 (EDT)
- 2, Kevin Wyllie 14:50, 20 May 2015 (EDT)
- 1, Kevin Patrick McGee 14:51, 20 May 2015 (EDT)
- Between-strain
- 2, Kam D. Dahlquist 14:43, 20 May 2015 (EDT), (wt vs. dZAP1)
- 0, Tessa A. Morris 14:44, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:46, 20 May 2015 (EDT)
- 3, Natalie Williams 14:49, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:50, 20 May 2015 (EDT)
- 2, Kevin Patrick McGee 14:51, 20 May 2015 (EDT)
- 2 Anindita Varshneya 14:53, 20 May 2015 (EDT)
- Total = 3 + 9 = 12
Δyox1
- Within-strain
- 1, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- 1, Kevin Wyllie 14:48, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:49, 20 May 2015 (EDT)
- 2, Natalie Williams 14:50, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:54, 20 May 2015 (EDT)
- Between-strain
- 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:48, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:49, 20 May 2015 (EDT)
- 2, Natalie Williams 14:50, 20 May 2015 (EDT)
- 2, Anindita Varshneya 14:53, 20 May 2015 (EDT)
- 2, Kevin Patrick McGee 14:54, 20 May 2015 (EDT)
- Total = 6 + 6 = 12
Δyhp1
- Within-strain
- 0, Tessa A. Morris 14:42, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:48, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:49, 20 May 2015 (EDT)
- 0, Natalie Williams 14:50, 20 May 2015 (EDT)
- 2, Kevin Patrick McGee 14:52, 20 May 2015 (EDT)
- Between-strain
- 0, Tessa A. Morris 14:42, 20 May 2015 (EDT)
- 0, Katherine Grace Johnson 14:48, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:49, 20 May 2015 (EDT)
- 2, Natalie Williams 14:50, 20 May 2015 (EDT)
- 2, Kevin Patrick McGee 14:52, 20 May 2015 (EDT)
- 2, Anindita Varshneya 14:53, 20 May 2015 (EDT)
- Total = 4 + 6 = 10
Δphd1
- Within-strain
- 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:42, 20 May 2015 (EDT)
- 1, Katherine Grace Johnson 14:50, 20 May 2015 (EDT)
- 2, Natalie Williams 14:51, 20 May 2015 (EDT)
- 1, Kevin Patrick McGee 14:54, 20 May 2015 (EDT)
- Between-strain
- 0, Tessa A. Morris 14:41, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:42, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:50, 20 May 2015 (EDT)
- 3, Natalie Williams 14:51, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:54, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:54, 20 May 2015 (EDT)
- Total = 4 + 5 = 9
Δnrg1
- Within-strain
- 2, Tessa A. Morris 14:40, 20 May 2015 (EDT)
- 1, Kevin Wyllie 14:41, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:51, 20 May 2015 (EDT)
- 0, Natalie Williams 14:52, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:54, 20 May 2015 (EDT)
- Between-strain
- 2, Tessa A. Morris 14:40, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:41, 20 May 2015 (EDT)
- 2, Katherine Grace Johnson 14:51, 20 May 2015 (EDT)
- 0, Natalie Williams 14:52, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:54, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:54, 20 May 2015 (EDT)
- Total = 5 + 4 = 9
Δarg80
- Within-strain
- 0, Katherine Grace Johnson 14:41, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:46, 20 May 2015 (EDT)
- 0, Natalie Williams 14:47, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:53, 20 May 2015 (EDT)
- Between-strain
- 0 Katherine Grace Johnson 14:41, 20 May 2015 (EDT)
- 0, Tessa A. Morris 14:46, 20 May 2015 (EDT)
- 0, Natalie Williams 14:47, 20 May 2015 (EDT)
- 0, Anindita Varshneya 14:49, 20 May 2015 (EDT)
- 0, Kevin Patrick McGee 14:50, 20 May 2015 (EDT)
- 0, Kevin Wyllie 14:53, 20 May 2015 (EDT)
- Total 0 + 0 = 0