Dahlquist:Research

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Please also visit the Dahlquist Lab Research page at Loyola Marymount University.

Research interests

1. XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the GenMAPP software
2. The Global Transcriptional Response of Saccharomyces cerevisiae to Cold Shock and Recovery
3. Mathematical Modeling of the Transcriptional Network Controlling the Environmental Stress Response in Saccharomyces cerevisiae
4. Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants

XMLPipeDB

XMLPipeDB is an open source suite of Java-based tools for automatically building relational databases from an XML schema (XSD). XMLPipeDB provides functionality for managing, querying, importing, and exporting information to and from XML data with minimum manual processing of the data. While its applicability is fairly general, the original motivation for XMLPipeDB was to create a solution for the management of biological data from different sources that are used to create Gene Databases for GenMAPP.

• XMLPipeDB Home Page
• XMLPipeDB at SourceForge.net

GenMAPP

GenMAPP (Gene Map Annotator and Pathway Profiler) is software for viewing and analyzing DNA microarray and other genomic and proteomic data on biological pathways.

• Creating MAPPs for GenMAPP
• Creating GenMAPP Gene Databases for additional species using the XMLPipeDB software tool chain.

Yeast Transcriptional Networks

• Yeast Transcription Factors