Dahlquist:Courses: Difference between revisions

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This information can also be found at the Dahlquist Lab [http://myweb.lmu.edu/kdahlqui/Courses.htm Courses] page at Loyola Marymount University.
For a complete list of courses taught by Dr. Dahlquist, please visit the Dahlquist Lab [http://kdahlquist.github.io/DahlquistLab/courses.htm Courses] page at Loyola Marymount University.  This list is comprised of courses that are hosted by Open WetWare.


== Spring 2013 ==
== Bioinformatics Laboratory ==


=== Biology 398-03:  Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics ===
* [[BIOL368/S20 | Biology 368:  Bioinformatics Laboratory Spring 2020]]
* [[BIOL368/F16 | Biology 368:  Bioinformatics Laboratory Fall 2016]]
* [[BIOL368/F14 | Biology 368:  Bioinformatics Laboratory Fall 2014]]
* [[BIOL368/F11 | Biology 368:  Bioinformatics Laboratory Fall 2011]]
* [[BIOL398-01/S10 | Biology 398-01: Bioinformatics Laboratory Spring 2010]]


=== Biology 478:  Molecular Biology of the Genome ===
== Biomathematical Modeling ==


== Fall 2011 Courses ==
* [[BIOL388/S19 | Biology 388-01:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2019]]
* [[BIOL398-05/S17 | Biology 398-05:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2017]]
* [[BIOL398-04/S15 | Biology 398-04:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2015]]
* [[BIOL398-03/S13 | Biology 398-03:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2013]]
* [[BIOL398-01/S11 | Biology 398-01:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics Spring 2011]]


=== Biology 201:  Cell Function ===
== Biological Databases ==


Section BIOL 201-01:  MWF 9:00-9:50 AM, Pereira 140
* [[BIOL367/F10 | Biology / Computer Science 367-01/ Honors 398-05: Biological Databases Fall 2010 partial site on this wiki]]


Section BIOL 201-03:  MWF 10:00-10:50 PM, Pereira 207
== Cell Function ==


Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.
* [[BIOL201/F10 | Biology 201-01, -02: Cell Function Protein Structure Exploration exercises]]. NOTE: these were under construction.


Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU])
== Issues in Biotechnology ==


=== Biology 368:  Bioinformatics Laboratory ===
* [[Dahlquist:Hwang Stem Cell Fraud Case Bibliography | Hwang Stem Cell Fraud Case Bibliography]]
 
Section BIOL 368-01:  W 1:00-4:50 PM, Seaver 120
 
[[BIOL368/F11 | BIOL368/F11 site on this wiki]]
 
== Previous Courses ==
 
* '''Spring 2011 Courses'''
** Biology 398-01:  Biomathematical Modeling/Mathematics 388-01:  Survey of Biomathematics
*** [[BIOL398-01/S11 | BIOL398-01/S11 site on this wiki]]
* '''Fall 2010 Courses'''
** Biology 201-01, -02: Cell Function
*** Protein Structure Exploration exercises are hosted [[BIOL201/F10 | here on this wiki]].  NOTE:  these are currently under construction.
** Biology / Computer Science 367-01/ Honors 398-05: Biological Databases
*** [https://www.cs.lmu.edu/biodb/fall2010 Course wiki on the CS network]
*** [[BIOL367/F10 | BIOL367/F10 site on this wiki]]
* '''Spring 2010 Courses'''
** Biology 398-01: Bioinformatics Laboratory
*** See [[BIOL398-01/S10 | BIOL398-01/S10 site on this wiki]].
** Biology 478: Molecular Biology of the Genome
* '''Fall 2009 Courses'''
** Biology 201-01, -02: Cell Function
** Biology / Computer Science / Honors 398-01: Biological Databases
*** [https://www.cs.lmu.edu/biodb/fall2009/index.php/Main_Page Course wiki] (for students in the course only).
* '''Spring 2009 Courses'''
** Biology 478: Molecular Biology of the Genome
** Honors 240-01: On the Nature of Things
***[http://sites.google.com/site/lmuonthenatureofthingsspr09/ Course Google Site] (for students in the course only).
* '''Fall 2008 Courses'''
** Biology 201-01: Cell Function
** Biology / Computer Science / Honors 398-01: Biological Databases
*** [http://myweb.lmu.edu/dondi/fall2008/cmsi398/ Course web site]
** Biology 398-01: Bioinformatics Laboratory
*** [http://sites.google.com/site/lmubioinformaticslabfall2008/Home Course Google Site]  (for students in the course only).
 
== Problem Space: Analysis of Prostate Cancer DNA Microarray Data ==
 
* GenMAPP and MAPPFinder are available from [http://www.genmapp.org http://www.genmapp.org]
* Data for this exercise was published in this paper: <biblio>#Paper1 pmid=12154061</biblio>
* Review article on prostate cancer: <biblio>#Paper2 pmid=12878745</biblio>
* [[Media:BIOL398-01_GenMAPP_ExpressionDatasetManager_20081023.pdf | GenMAPP Prostate Cancer Exercise Part 1]]
** This is the link to the data file, [[Media:Hs_ED_ProstateCancer_edited.txt | <Hs_ED_ProstateCancer_edited.txt>]], mentioned in step 3 of the protocol.
* [[Media:BIOL398-01_MAPPFinder_20081021.pdf | GenMAPP Prostate Cancer Exercise Part 2 (MAPPFinder)]]
** This part of the exercise can be completed independently of Part 1 by downloading the GenMAPP Expression Dataset <Hs_ED_ProstateCancer_20060130.gex> from GenMAPP.org using the Data Acquisition Tool from within the GenMAPP program.
*# Launch GenMAPP.
*# Select the menu item, Data > Download Data from GenMAPP.org
*# Expand the "Expression Datasets" folder, and click on "Homo sapiens" to see the file.
*# Check the box next to the filename.
*# Click the Start button to download.


[[Category:Lab]]
[[Category:Lab]]

Latest revision as of 14:04, 20 January 2022

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For a complete list of courses taught by Dr. Dahlquist, please visit the Dahlquist Lab Courses page at Loyola Marymount University. This list is comprised of courses that are hosted by Open WetWare.

Bioinformatics Laboratory

Biomathematical Modeling

Biological Databases

Cell Function

Issues in Biotechnology

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