Dahlquist:Courses: Difference between revisions
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This information can also be found at the Dahlquist Lab [http://myweb.lmu.edu/kdahlqui/Courses.htm Courses] page at Loyola Marymount University. | This information can also be found at the Dahlquist Lab [http://myweb.lmu.edu/kdahlqui/Courses.htm Courses] page at Loyola Marymount University. | ||
== Fall | == Fall 2013 Courses == | ||
=== Biology 201: Cell Function === | === Biology 201: Cell Function === | ||
Section BIOL 201- | Section BIOL 201-03: MWF 11:00-11:50 AM, Doolan 222 | ||
Section BIOL 201- | Section BIOL 201-04: MWF 12:00-12:50 PM, Doolan 222 | ||
Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function. | Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function. | ||
Currents Students: For syllabus and course information login to [https://mylmuconnect. | Currents Students: For syllabus and course information login to [https://mylmuconnect.blackboard.com/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU]) | ||
=== Biology/Computer Science 367/Honors 398: Biological Databases === | |||
TR 9:25-10:40 AM: Doolan 219 | |||
[ | [https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/Main_Page Course web site and public wiki] | ||
== Spring | == Spring 2013 Courses == | ||
=== Biology 398- | === Biology 398-03: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics === | ||
TR 9:25 - 10:40 AM, Seaver 120 | TR 9:25 - 10:40 AM, Seaver 120 | ||
[[BIOL398- | [[BIOL398-03/S13 | BIOL398-03/S13 site on this wiki]] | ||
=== Biology 478: Molecular Biology of the Genome === | |||
== Fall | == Fall 2011 Courses == | ||
=== Biology 201: Cell Function === | === Biology 201: Cell Function === | ||
Section BIOL 201-01 MWF 9:00-9:50 AM, | Section BIOL 201-01: MWF 9:00-9:50 AM, Pereira 140 | ||
Section BIOL 201- | Section BIOL 201-03: MWF 10:00-10:50 PM, Pereira 207 | ||
Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function. | Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function. | ||
Line 39: | Line 42: | ||
Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU]) | Currents Students: For syllabus and course information login to [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect], formerly known as Blackboard (or via [https://my.lmu.edu/portal/page/portal/mylmu/welcome MYLMU]) | ||
=== Biology 368: Bioinformatics Laboratory === | |||
=== Biology | |||
Section BIOL 368-01: W 1:00-4:50 PM, Seaver 120 | |||
[[ | [[BIOL368/F11 | BIOL368/F11 site on this wiki]] | ||
== Previous Courses == | == Previous Courses == | ||
* '''Spring 2011 Courses''' | |||
** Biology 398-01: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics | |||
*** [[BIOL398-01/S11 | BIOL398-01/S11 site on this wiki]] | |||
* '''Fall 2010 Courses''' | |||
** Biology 201-01, -02: Cell Function | |||
*** Protein Structure Exploration exercises are hosted [[BIOL201/F10 | here on this wiki]]. NOTE: these are currently under construction. | |||
** Biology / Computer Science 367-01/ Honors 398-05: Biological Databases | |||
*** [https://www.cs.lmu.edu/biodb/fall2010 Course wiki on the CS network] | |||
*** [[BIOL367/F10 | BIOL367/F10 site on this wiki]] | |||
* '''Spring 2010 Courses''' | * '''Spring 2010 Courses''' | ||
** Biology 398-01: Bioinformatics Laboratory | ** Biology 398-01: Bioinformatics Laboratory | ||
*** See [[BIOL398-01/S10 | | *** See [[BIOL398-01/S10 | BIOL398-01/S10 site on this wiki]]. | ||
** Biology 478: Molecular Biology of the Genome | ** Biology 478: Molecular Biology of the Genome | ||
* '''Fall 2009 Courses''' | * '''Fall 2009 Courses''' |
Revision as of 10:40, 12 September 2013
This information can also be found at the Dahlquist Lab Courses page at Loyola Marymount University.
Fall 2013 Courses
Biology 201: Cell Function
Section BIOL 201-03: MWF 11:00-11:50 AM, Doolan 222
Section BIOL 201-04: MWF 12:00-12:50 PM, Doolan 222
Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.
Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)
Biology/Computer Science 367/Honors 398: Biological Databases
TR 9:25-10:40 AM: Doolan 219
Course web site and public wiki
Spring 2013 Courses
Biology 398-03: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics
TR 9:25 - 10:40 AM, Seaver 120
BIOL398-03/S13 site on this wiki
Biology 478: Molecular Biology of the Genome
Fall 2011 Courses
Biology 201: Cell Function
Section BIOL 201-01: MWF 9:00-9:50 AM, Pereira 140
Section BIOL 201-03: MWF 10:00-10:50 PM, Pereira 207
Description: The purpose of this course is to introduce students to the core concepts of cellular biology that needed to succeed in upper-division biology courses. The overall theme for this course is how structure implies function for macromolecules and cells. Course topics include: cellular and sub-cellular structures and functions, DNA and RNA structure and function, protein synthesis and structure, enzyme function, metabolic pathways, and membrane function.
Currents Students: For syllabus and course information login to MyLMU Connect, formerly known as Blackboard (or via MYLMU)
Biology 368: Bioinformatics Laboratory
Section BIOL 368-01: W 1:00-4:50 PM, Seaver 120
Previous Courses
- Spring 2011 Courses
- Biology 398-01: Biomathematical Modeling/Mathematics 388-01: Survey of Biomathematics
- Fall 2010 Courses
- Biology 201-01, -02: Cell Function
- Protein Structure Exploration exercises are hosted here on this wiki. NOTE: these are currently under construction.
- Biology / Computer Science 367-01/ Honors 398-05: Biological Databases
- Biology 201-01, -02: Cell Function
- Spring 2010 Courses
- Biology 398-01: Bioinformatics Laboratory
- Biology 478: Molecular Biology of the Genome
- Fall 2009 Courses
- Biology 201-01, -02: Cell Function
- Biology / Computer Science / Honors 398-01: Biological Databases
- Course wiki (for students in the course only).
- Spring 2009 Courses
- Biology 478: Molecular Biology of the Genome
- Honors 240-01: On the Nature of Things
- Course Google Site (for students in the course only).
- Fall 2008 Courses
- Biology 201-01: Cell Function
- Biology / Computer Science / Honors 398-01: Biological Databases
- Biology 398-01: Bioinformatics Laboratory
- Course Google Site (for students in the course only).
Problem Space: Analysis of Prostate Cancer DNA Microarray Data
- GenMAPP and MAPPFinder are available from http://www.genmapp.org
- Data for this exercise was published in this paper:
- Review article on prostate cancer:
- GenMAPP Prostate Cancer Exercise Part 1
- This is the link to the data file, <Hs_ED_ProstateCancer_edited.txt>, mentioned in step 3 of the protocol.
- GenMAPP Prostate Cancer Exercise Part 2 (MAPPFinder)
- This part of the exercise can be completed independently of Part 1 by downloading the GenMAPP Expression Dataset <Hs_ED_ProstateCancer_20060130.gex> from GenMAPP.org using the Data Acquisition Tool from within the GenMAPP program.
- Launch GenMAPP.
- Select the menu item, Data > Download Data from GenMAPP.org
- Expand the "Expression Datasets" folder, and click on "Homo sapiens" to see the file.
- Check the box next to the filename.
- Click the Start button to download.