Dahlquist:BOSC ISMB 2016 Notes: Difference between revisions
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* [http://sysmod.info/Computational_Modeling_of_Biological_Systems_(SysMod) COSI/SIG SysMod (formerly BioPathways)] | * [http://sysmod.info/Computational_Modeling_of_Biological_Systems_(SysMod) COSI/SIG SysMod (formerly BioPathways)] | ||
* [http://pathways.embl.de/ iPath: Interactive Pathways Explorer] | * [http://pathways.embl.de/ iPath: Interactive Pathways Explorer] | ||
* When comparing data from different protein-protein interaction data, need to calibrate raw quality scores, see [http://nar.oxfordjournals.org/content/33/suppl_1/D433.full von Mering et al 2005] | |||
Revision as of 07:37, 10 July 2016
BOSC/NetBio SIG Day 1 2016-07-08
BOSC SIG Day 2 2016-07-09
- MetaR from Fabien Campagne lab
- potentially collaborate on a grant; broader impacts of teaching MetaR to undergrads
- GenePattern Notebooks
- an integrative analytical environment for genomic research; can do RNAseq analysis
- available on Indiana University supercomputer cluster
- ReportMD
- uses R markdown to generate linked HTML reports
ISMB Day 1 2016-07-10
- COSI/SIG SysMod (formerly BioPathways)
- iPath: Interactive Pathways Explorer
- When comparing data from different protein-protein interaction data, need to calibrate raw quality scores, see von Mering et al 2005
