Courageous Cantaloupe

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March 2010, third public data release through ProteomeCommons.org's Tranche Network Collaborators User:Andrea Loehr (PGP) User:Alexander Wait Zaranek (PGP) User:Brandon K. Grantham (PGP) User:Bryan E. Smith (Tranche) Content Raw images extended to include PGP2, PGP4 PGP reads from GA Pipeline 1.0 PGP reads from GA Pipeline 1.3.2 PGP reads from Swift Alignment results from MAQ Data from accepted Publications BOINC application Software Trait-O-Matic Genomerator Eucalyptus PeoplePower and StatusUpdate AL: collect all data on Orchestra /groups/pgp/ PGP4 now available process data with GAP1.3.2, Swift, MAQ BOINC application read documentation, download and use correspond with David Anderson keep track of published/accepted data in touch with Jay Lee AWZ: Software BOINC application David Anderson suggested we start by using the mailing lists. He is mostly focused on Bossa and I can't help wonder if we should be focused on Bossa ourselves. It would be very impressive to have our community of volunteers helping to populate a database of genetic variants by culling the literature and performing other tasks. See http://stardustathome.ssl.berkeley.edu/ for an example of the sort of project that Bossa is intended to facilitate. Also see Amazon's Mechanical Turk BKG: BOINC application read documentation, download and use document progress at PGP and BOINC BES: Tranche upload fold Tranche up-/download tools into BOINC application Data Processing AL: I have processed the following data with GAP1.3.2 and Swift: Processed: PGP1: PGP1_37_003 PGP2: PGP2_37_002 PGP3: PGP3_35_003 PGP4: PGP4_43_002 PGP5: PGP5_44_002 PGP8: PGP8_51_002, PGP8_37_001 PGP9: PGP9_43_003 PGP10: PGP10_41_003 Open: PGP7_44_004 PGP8_51_006 PGP9_51_003, PGP9_51_007 Notes: PGP5_44_002 stacks 95-100 could not be processed with Swift. Nava implemented a bug fix to Swift, needs rerun with latest Swift version. PGP9_43_003 stacks 1,2 .fastq and .nonpf missing, need rerun PPG6: Do not process, redacted. Data location: Complete Swift results including raw intensity files and reads are at /boinc-dev-scractch/PGP* Complete RunFolders from GAP1.3.2 are at /boinc-scratch/RunFolder*